Gene omics information

Query gene ID At3g49780
Gene name ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.124.9At3g49780824140ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR)Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor. Plants overexpressing this gene (under a 35S promoter), develop normal cotyledons and hypocotyls but their growth, in particular that of their roots, was faster than that of wildtype.S.X.H.G.
0.5065.3At2g31945817753unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.103.4At1g03850839392glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:response to cytokinin stimulus;C:unknown;PFBS.X.H.G.
0.030.6At5g49450835005AtbZIP1 (Arabidopsis thaliana basic leucine-zipper 1)F:transcription factor activity, protein heterodimerization activity, DNA binding;P:anther dehiscence, regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMOS.X.H.G.
0.020.4At4g15610827238integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
52.099.8GSM133814Diamond_A-3-Diamo-met_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
49.199.8GSM133815Diamond_A-4-Diamo-met_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
49.099.8E-MEXP-1443-raw-cel-1581869745
46.299.8GSM133812Diamond_A-1-Diamo-met_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
44.899.8GSM133808Diamond_A-1-Diamo-fum_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
44.499.8GSM133809Diamond_A-2-Diamo-fum_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
40.699.8GSM133810Diamond_A-3-Diamo-fum_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
39.599.8GSM134208Murray_3-4_D7-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cells
35.599.7GSM133811Diamond_A-4-Diamo-fum_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
34.699.7GSM133813Diamond_A-2-Diamo-met_SLDGSE5735Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.025e-444At5g07770830670formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:unknown;C:chloroplast;MPOFBVAC.G.S.X.
0.033e-238At5g51420835216long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family proteinF:acyltransferase activity;P:unknown;C:unknown;PBOC.G.S.X.
0.031e-136At5g07760830669formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:chloroplast;MPBOFVAC.G.S.X.
0.021e-136At4g30920829216cytosol aminopeptidase family proteinF:manganese ion binding, metalloexopeptidase activity, aminopeptidase activity;P:proteolysis, protein metabolic process;C:chloroplast, vacuole;OBMPFAC.G.S.X.
0.031e-136At3g27350822356unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPOFBC.G.S.X.
0.041e-136At2g20825816614ULT2 (ULTRAPETALA 2)F:DNA binding;P:biological_process unknown;C:cytosol, nucleus;PC.G.S.X.
0.061e-136At2g3959081854440S ribosomal protein S15A (RPS15aC)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOMAPFC.G.S.X.
0.021e-136At1g34270840327exostosin family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOFC.G.S.X.
0.034e-134At5g07780830671formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:chloroplast;MPOBFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.064e-238Glycine maxGmaAffx.88690.2.S1_s_atBK000119.1--3e+0At5g65870ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR)C.G.S.X.
0.042e-134Hordeum vulgareHZ53O02r_atHZ53O02r--1e+0At3g49780ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR)C.G.S.X.
0.042e-136Oryza sativaOsAffx.17687.1.S1_at---0C.G.S.X.
0.073e-342Populus trichocarpaPtpAffx.149533.1.A1_atCV261920hypothetical protein-5e-3At3g49780ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR)C.G.S.X.
0.063e-238Triticum aestivumTaAffx.29938.1.S1_atCA632220--6e-2At3g49780ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR)C.G.S.X.
0.042e+030Vitis vinifera1620425_atCF414994hypothetical protein LOC100260808-3e-10At2g17850-C.G.S.X.
0.042e-134Zea maysZmAffx.1209.1.A1_atBG349642--1e+0At3g49780ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0008283The multiplication or reproduction of cells, resulting in the expansion of a cell population.
CGO:0009887Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.
CGO:0030154The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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