CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g49780

Gene name ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.12 4.9 At3g49780 824140 ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR) Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor. Plants overexpressing this gene (under a 35S promoter), develop normal cotyledons and hypocotyls but their growth, in particular that of their roots, was faster than that of wildtype. S.X. H.G.
0.50 65.3 At2g31945 817753 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.10 3.4 At1g03850 839392 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:response to cytokinin stimulus;C:unknown;PFB S.X. H.G.
0.03 0.6 At5g49450 835005 AtbZIP1 (Arabidopsis thaliana basic leucine-zipper 1) F:transcription factor activity, protein heterodimerization activity, DNA binding;P:anther dehiscence, regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMO S.X. H.G.
0.02 0.4 At4g15610 827238 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
52.0 99.8 GSM133814 Diamond_A-3-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
49.1 99.8 GSM133815 Diamond_A-4-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
49.0 99.8 E-MEXP-1443-raw-cel-1581869745
46.2 99.8 GSM133812 Diamond_A-1-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
44.8 99.8 GSM133808 Diamond_A-1-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
44.4 99.8 GSM133809 Diamond_A-2-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
40.6 99.8 GSM133810 Diamond_A-3-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
39.5 99.8 GSM134208 Murray_3-4_D7-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
35.5 99.7 GSM133811 Diamond_A-4-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
34.6 99.7 GSM133813 Diamond_A-2-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 5e-4 44 At5g07770 830670 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:unknown;C:chloroplast;MPOFBVA C.G. S.X.
0.03 3e-2 38 At5g51420 835216 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein F:acyltransferase activity;P:unknown;C:unknown;PBO C.G. S.X.
0.03 1e-1 36 At5g07760 830669 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:chloroplast;MPBOFVA C.G. S.X.
0.02 1e-1 36 At4g30920 829216 cytosol aminopeptidase family protein F:manganese ion binding, metalloexopeptidase activity, aminopeptidase activity;P:proteolysis, protein metabolic process;C:chloroplast, vacuole;OBMPFA C.G. S.X.
0.03 1e-1 36 At3g27350 822356 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPOFB C.G. S.X.
0.04 1e-1 36 At2g20825 816614 ULT2 (ULTRAPETALA 2) F:DNA binding;P:biological_process unknown;C:cytosol, nucleus;P C.G. S.X.
0.06 1e-1 36 At2g39590 818544 40S ribosomal protein S15A (RPS15aC) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOMAPF C.G. S.X.
0.02 1e-1 36 At1g34270 840327 exostosin family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOF C.G. S.X.
0.03 4e-1 34 At5g07780 830671 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:chloroplast;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 4e-2 38 Glycine max GmaAffx.88690.2.S1_s_at BK000119.1 - - 3e+0 At5g65870 ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR) C.G. S.X.
0.04 2e-1 34 Hordeum vulgare HZ53O02r_at HZ53O02r - - 1e+0 At3g49780 ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR) C.G. S.X.
0.04 2e-1 36 Oryza sativa OsAffx.17687.1.S1_at - - - 0 C.G. S.X.
0.07 3e-3 42 Populus trichocarpa PtpAffx.149533.1.A1_at CV261920 hypothetical protein - 5e-3 At3g49780 ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR) C.G. S.X.
0.06 3e-2 38 Triticum aestivum TaAffx.29938.1.S1_at CA632220 - - 6e-2 At3g49780 ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR) C.G. S.X.
0.04 2e+0 30 Vitis vinifera 1620425_at CF414994 hypothetical protein LOC100260808 - 3e-10 At2g17850 - C.G. S.X.
0.04 2e-1 34 Zea mays ZmAffx.1209.1.A1_at BG349642 - - 1e+0 At3g49780 ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0008283 The multiplication or reproduction of cells, resulting in the expansion of a cell population.
C GO:0009887 Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.
C GO:0030154 The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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