Gene omics information

Query gene ID At3g49680
Gene name BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6680.1At3g49680824130BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.S.X.H.G.
0.6781.6At2g19940816513N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerizationF:in 6 functions;P:amino acid metabolic process, response to cadmium ion;C:nucleolus, chloroplast stroma, chloroplast, membrane;BOAFPS.X.H.G.
0.5873.8At5g04710830349aspartyl aminopeptidase, putativeF:aminopeptidase activity, zinc ion binding;P:proteolysis;C:chloroplast, vacuole;BOFMPAS.X.H.G.
0.5873.8At3g57560824923aspartate/glutamate/uridylate kinase family proteinencodes a N-acetylglutamate kinase, involved in arginine biosynthesisS.X.H.G.
0.5673.0At3g20320821576TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process.S.X.H.G.
0.5673.0At4g33680829510AGD2 (ABERRANT GROWTH AND DEATH 2)Involved in disease resistance against Pseudomonas syringae. mutants have elevated SA levels, a low level of spontaneous cell death, callose deposition, and enlarged cells in leaves. genetically maps on chr 4 between L23H3 and nga1139.S.X.H.G.
0.5570.6At1g80600844399WIN1 (HOPW1-1-INTERACTING 1)Encodes HopW1-1-Interacting protein 1 (WIN1). Interacts with the P. syringae effector HopW1-1. WIN1 is a putative acetylornithine transaminase. Modulates plant defenses against bacteria. Three WIN proteins are identified so far (WIN1: AT1G80600; WIN2: AT4G31750; WIN3: AT5G13320).S.X.H.G.
0.5570.6At3g13490820551OVA5 (OVULE ABORTION 5)Encodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast. Plants mutated in this gene exhibit an ovule abortion phenotype.S.X.H.G.
0.5368.6At1g19800838568TGD1 (TRIGALACTOSYLDIACYLGLYCEROL 1)Encodes a permease-Like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate.S.X.H.G.
0.5267.4At3g51140824278-F:unknown;P:biological_process unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BPOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
21.899.6GSM183511MYB76_OE_rep1GSE7570ATR1_like_Clade_OE_and_miR
21.199.6GSM183512MYB76_OE_rep2GSE7570ATR1_like_Clade_OE_and_miR
20.299.6E-MEXP-1799-raw-cel-1665601214
19.399.6E-MEXP-1799-raw-cel-1665601146
14.299.4GSM183513MYB29_OE_rep1GSE7570ATR1_like_Clade_OE_and_miR
13.399.4GSM183514MYB29_OE_rep2GSE7570ATR1_like_Clade_OE_and_miR
12.099.3E-MEXP-1799-raw-cel-1665601185
10.299.2E-MEXP-1799-raw-cel-1665601196
9.399.1E-MEXP-1799-raw-cel-1665601126
9.299.1E-MEXP-1799-raw-cel-1665601205
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.690737At5g65780836707ATBCAT-5encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutantC.G.S.X.
0.084e-859At1g10070837543ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.C.G.S.X.
0.011e-242At5g20320832154DCL4 (DICER-LIKE 4)Encodes an RNase III-like enzyme that catalyzes processing of trans-acting small interfering RNA precursors in a distinct small RNA biogenesis pathway. The protein is also involved in the production of 21-nt primary siRNAs from both inverted-repeat constructs and endogenous sequences, as well as the RDR6-dependent 21-nt secondary siRNAs involved in long-range cell-to-cell signaling. It binds DRB4, a ds-RNA binding protein.C.G.S.X.
0.012e-138At5g28680832975protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.012e-138At3g49050824066lipase class 3 family protein / calmodulin-binding heat-shock protein, putativeF:triacylglycerol lipase activity, calmodulin binding;P:lipid catabolic process, lipid metabolic process;C:endomembrane system;MPOFBC.G.S.X.
0.012e-138At1g04210839441leucine-rich repeat family protein / protein kinase family proteinF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.292e-54214Glycine maxGmaAffx.49521.2.S1_atBF066739--5e-34At5g65780ATBCAT-5C.G.S.X.
0.241e-1273Hordeum vulgareContig20424_atContig20424--2e-12At3g49680BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)C.G.S.X.
0.211e-22109Oryza sativaOs05g0558400AK072756.1-Branched-chain-amino-acid aminotransferase 3,chloroplast precursor (EC 2.6.1.42) (Atbcat-3)5e-24At5g65780ATBCAT-5C.G.S.X.
0.257e-63242Populus trichocarpaPtpAffx.41318.1.S1_a_atCV265728hypothetical protein-3e-53At5g65780ATBCAT-5C.G.S.X.
0.091e-242Triticum aestivumTaAffx.129158.1.A1_atCA673700--8e-3At3g49680BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)C.G.S.X.
0.242e-32139Vitis vinifera1622060_atBM436271--3e-32At5g65780ATBCAT-5C.G.S.X.
0.231e-21103Zea maysZm.2520.1.A1_atAW400289hypothetical protein LOC100191754-5e-21At3g49680BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
LGO:0009081The chemical reactions and pathways involving amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00009Link to KaPPA-View 4Leucine, valine, isoleucine and alanine biosynthesis
00077Link to KaPPA-View 4Leucine, valine and isoleucine metabolism



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00280Link to KEGG PATHWAYValine, leucine and isoleucine degradation
00290Link to KEGG PATHWAYValine, leucine and isoleucine biosynthesis
00770Link to KEGG PATHWAYPantothenate and CoA biosynthesis
00966Link to KEGG PATHWAYGlucosinolate biosynthesis
01063Link to KEGG PATHWAYBiosynthesis of alkaloids derived from shikimate pathway
01065Link to KEGG PATHWAYBiosynthesis of alkaloids derived from histidine and purine
01100Link to KEGG PATHWAYMetabolic pathways
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