CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g49670

Gene name BAM2 (BARELY ANY MERISTEM 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At3g49670 824129 BAM2 (BARELY ANY MERISTEM 2) Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM1,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM2 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. S.X. H.G.
0.80 89.8 At3g26920 822308 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF S.X. H.G.
0.77 88.0 At5g45590 834597 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO S.X. H.G.
0.75 86.9 At1g24340 839050 emb2421 (embryo defective 2421) F:oxidoreductase activity, monooxygenase activity;P:embryonic development ending in seed dormancy;C:unknown;BOFPM S.X. H.G.
0.73 85.5 At1g50510 841473 indigoidine synthase A family protein F:unknown;P:biological_process unknown;C:plasma membrane;OBFMP S.X. H.G.
0.44 57.2 At2g32910 817853 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
455.6 100.0 GSM133761 Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
12.3 99.3 GSM133759 Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.2 99.2 GSM131771 Quick_A96_1-48hr_Rep4_ATH1 GSE5636 Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
9.6 99.1 GSM131766 Quick_A74_1-96hr_Rep3_ATH1 GSE5636 Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
9.5 99.1 GSM133253 RIKEN-GODA11A-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
9.3 99.1 GSM133263 RIKEN-GODA3A-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
9.3 99.1 GSM131784 Quick_A41_2-24hr_Rep2_ATH1 GSE5637 Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 2: Elevated CO2 and Ambient Light)
9.0 99.1 GSM131791 Quick_A71_2-48hr_Rep3_ATH1 GSE5637 Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 2: Elevated CO2 and Ambient Light)
8.9 99.0 GSM133273 RIKEN-GODA8A-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
8.5 99.0 GSM131758 Quick_A40_1-24hr_Rep2_ATH1 GSE5636 Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.71 0 678 At5g65700 836699 BAM1 (BARELY ANY MERISTEM 1) Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. C.G. S.X.
0.06 1e-22 109 At4g20270 827774 BAM3 (BARELY ANY MERISTEM 3) Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. C.G. S.X.
0.09 4e-13 77 At1g75820 843915 CLV1 (CLAVATA 1) Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). CLV3 peptide binds directly CLV1 ectodomain. C.G. S.X.
0.04 4e-7 57 At5g25930 832662 leucine-rich repeat family protein / protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVA C.G. S.X.
0.02 3e-5 52 At4g29450 829066 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 1e-4 50 At1g18390 838420 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.01 2e-3 46 At2g02220 814753 PSKR1 (PHYTOSULFOKIN RECEPTOR 1) Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ). C.G. S.X.
0.01 2e-3 46 At2g41970 818797 protein kinase, putative F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 4e-54 214 Glycine max Gma.2496.1.S1_at AF244888.1 receptor-like protein kinase 1 - 1e-75 At5g65700 BAM1 (BARELY ANY MERISTEM 1) C.G. S.X.
0.14 3e-12 73 Hordeum vulgare Contig13701_at Contig13701 - - 3e-12 At3g49670 BAM2 (BARELY ANY MERISTEM 2) C.G. S.X.
0.12 1e-8 63 Oryza sativa Os03g0773700 AK102670.1 - Receptor-like protein kinase 2 8e-9 At3g49670 BAM2 (BARELY ANY MERISTEM 2) C.G. S.X.
0.33 2e-46 188 Populus trichocarpa PtpAffx.207429.1.S1_at pmrna14744 hypothetical protein - 7e-80 At5g65700 BAM1 (BARELY ANY MERISTEM 1) C.G. S.X.
0.12 1e-4 50 Triticum aestivum TaAffx.120936.1.S1_at BJ307684 - - 1e-25 At5g65700 BAM1 (BARELY ANY MERISTEM 1) C.G. S.X.
0.04 3e-14 79 Vitis vinifera 1616189_at CF511570 hypothetical protein LOC100260741 - 6e-18 At1g75820 CLV1 (CLAVATA 1) C.G. S.X.
0.12 5e-14 79 Zea mays Zm.1140.1.S1_at BM073428 hypothetical protein LOC100279272 - 4e-14 At3g49670 BAM2 (BARELY ANY MERISTEM 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009934 Any process that modulates the frequency, rate or extent of meristem organization.
X GO:0010075 Any process involved in maintaining the size and shape of a meristem.
X GO:0048229 The process whose specific outcome is the progression of the gametophyte over time, from its formation to the mature structure. The gametophyte is the gamete-producing individual or phase in the life cycle having alternation of generations. An example of this process is found in Arabidopsis thaliana.
X GO:0048437 The process whose specific outcome is the progression of the floral organ over time, from its formation to the mature structure.
X GO:0010480 The process aimed at the progression of a microsporocyte cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. A microsporocyte is a diploid (2n) cell that undergoes meiosis and forms four haploid (1n) microspores; also called microspore mother cell and, in seed plants, pollen mother cell.
X GO:0048653 The process whose specific outcome is the progression of the anther over time, from its formation to the mature structure.
C GO:0006468 The process of introducing a phosphate group on to a protein.
C GO:0007169 The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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