Gene omics information

Query gene ID At3g49580
Gene name LSU1 (RESPONSE TO LOW SULFUR 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4050.8At3g49580824120LSU1 (RESPONSE TO LOW SULFUR 1)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
0.5065.3At5g26220832691ChaC-like family proteinF:molecular_function unknown;P:response to lead ion, response to cadmium ion;C:cellular_component unknown;BMOFPS.X.H.G.
0.4050.8At5g48850834943ATSDI1 (SULPHUR DEFICIENCY-INDUCED 1)homologous to the wheat sulphate deficiency-induced gene sdi1. Expression in root and leaf is induced by sulfur starvation. Knockout mutants retained higher root and leaf sulfate concentrations, indicating a role in regulation of stored sulfate pools.S.X.H.G.
0.3338.1At1g56600842114AtGolS2 (Arabidopsis thaliana galactinol synthase 2)F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBOS.X.H.G.
0.2522.6At1g66390842957MYB90 (MYB DOMAIN PROTEIN 90)production of anthocyanin pigment 2 protein (PAP2)S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
236.0100.0E-MEXP-807-raw-cel-1173273252
213.8100.0GSM131322AtGen_6-3422_Saltstress-Roots-6.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
188.6100.0GSM269833T8 leaf-drought-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
174.1100.0GSM269815T6 leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
122.699.9GSM269831T6 leaf-drought-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
111.599.9GSM131321AtGen_6-3421_Saltstress-Roots-6.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
92.799.9GSM133867Cain_1-3_CDB1-Knockout_Rep1_ATH1GSE5740Polycomb Binding Protein
92.499.9GSM131325AtGen_6-3521_Saltstress-Roots-12.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
89.199.9E-MEXP-807-raw-cel-1173273144
77.899.9GSM270868Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.575e-38157At3g49570824119LSU3 (RESPONSE TO LOW SULFUR 3)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
0.023e-238At3g11402820312DC1 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVAC.G.S.X.
0.011e-136At4g20850827833TPP2 (TRIPEPTIDYL PEPTIDASE II)Tripeptidyl Peptidase II. Ser protease that assembles into a large oligomeric complex containing two proteins of 153 and 142 kD that are derived from a single TPP2 gene, with the smaller version missing part of the C-terminal end. Not essential, based on the lack of phenotype of a T-DNA disruption mutant.C.G.S.X.
0.395e-134At5g24660832538LSU2 (RESPONSE TO LOW SULFUR 2)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
0.045e-134At5g11990831072proline-rich family proteinF:unknown;P:biological_process unknown;C:anchored to membrane;MPOFBVAC.G.S.X.
0.045e-134At3g05000819661transport protein particle (TRAPP) component Bet3 family proteinF:transporter activity;P:pollen tube development;C:cellular_component unknown;MFOPC.G.S.X.
0.015e-134At3g54670824632TTN8 (TITAN8)cohesinC.G.S.X.
0.065e-134At1g02710839483glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAC.G.S.X.
0.015e-134At1g21580838759hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVAC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.052e-136Glycine maxGmaAffx.70625.1.S1_atBM732315--2e-1At3g49580LSU1 (RESPONSE TO LOW SULFUR 1)C.G.S.X.
0.043e-134Hordeum vulgareContig5961_s_atContig5961--2e-18At1g49400emb1129 (embryo defective 1129)C.G.S.X.
0.063e-136Oryza sativaOsAffx.20211.1.S1_at---0C.G.S.X.
0.037e-134Populus trichocarpaPtpAffx.202166.1.S1_atpmrna4333hypothetical protein-2e-12At2g45430DNA-binding protein-relatedC.G.S.X.
0.056e-134Triticum aestivumTaAffx.14777.1.A1_atCA736788--1e+0At3g49580LSU1 (RESPONSE TO LOW SULFUR 1)C.G.S.X.
0.084e-236Vitis vinifera1612521_s_atCB977361hypothetical protein LOC100267499-3e-1At3g49580LSU1 (RESPONSE TO LOW SULFUR 1)C.G.S.X.
0.039e-132Zea maysZm.10518.1.S1_atBQ577750--2e+0At1g02710glycine-rich proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage