CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g49430

Gene name SRp34a (Ser/Arg-rich protein 34a)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.42 53.9 At3g49430 824105 SRp34a (Ser/Arg-rich protein 34a) F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA splicing;C:nucleolus;MOPFBVA S.X. H.G.
0.50 65.3 At2g24590 816995 splicing factor, putative F:zinc ion binding, nucleotide binding, nucleic acid binding;P:RNA splicing;C:nucleolus;MPFOBVA S.X. H.G.
0.35 41.6 At2g40290 818621 eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative F:RNA binding, translation initiation factor activity;P:translation;C:nucleus;BOMAFPV S.X. H.G.
0.25 22.6 At1g79650 844304 RAD23 putative DNA repair protein RAD23 S.X. H.G.
0.22 17.5 At3g56150 824781 EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) member of eIF3c - eukaryotic initiation factor 3c S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
39.1 99.8 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.0 99.6 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.9 99.3 GSM133809 Diamond_A-2-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
11.9 99.3 GSM270868 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
11.9 99.3 GSM311274 Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
10.7 99.2 GSM133808 Diamond_A-1-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
10.5 99.2 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
9.7 99.1 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
9.6 99.1 GSM133815 Diamond_A-4-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
9.5 99.1 GSM270870 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.22 2e-12 73 At1g09140 837433 SF2/ASF-like splicing modulator (SRP30) Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed. C.G. S.X.
0.15 2e-6 54 At1g02840 839262 SR1 SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF. C.G. S.X.
0.06 4e-1 36 At4g02430 828027 pre-mRNA splicing factor, putative / SR1 protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA C.G. S.X.
0.02 4e-1 36 At4g38400 829997 ATEXLA2 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A2) member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 4e-27 123 Glycine max GmaAffx.91659.1.S1_s_at CF807384 - - 5e-29 At3g49430 SRp34a (Ser/Arg-rich protein 34a) C.G. S.X.
0.19 2e-10 65 Hordeum vulgare Contig4304_at Contig4304 - - 3e-12 At1g09140 SF2/ASF-like splicing modulator (SRP30) C.G. S.X.
0.20 1e-9 65 Oryza sativa Os01g0316600 AK103534.1 - SF2/ASF-like splicing modulator Srp30, variant 1 1e-9 At3g49430 SRp34a (Ser/Arg-rich protein 34a) C.G. S.X.
0.35 3e-43 176 Populus trichocarpa PtpAffx.5221.1.A1_at CV260210 hypothetical protein - 3e-43 At3g49430 SRp34a (Ser/Arg-rich protein 34a) C.G. S.X.
0.17 8e-6 52 Triticum aestivum Ta.3227.2.S1_x_at CK198384 alternative splicing regulator - 1e-17 At1g09140 SF2/ASF-like splicing modulator (SRP30) C.G. S.X.
0.07 1e-4 46 Vitis vinifera 1616840_at CF608637 hypothetical protein LOC100255499 - 9e-15 At1g09140 SF2/ASF-like splicing modulator (SRP30) C.G. S.X.
0.11 5e-11 67 Zea mays Zm.10359.1.S1_at T69043 ASF/SF2-like pre-mRNA splicing factor SRP32 - 2e-19 At1g09140 SF2/ASF-like splicing modulator (SRP30) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008380 The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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