Gene omics information

Query gene ID At3g49310
Gene name -
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g49310824093-F:unknown;P:unknown;C:endomembrane system;BPMOFAS.X.H.G.
0.5065.3At3g55140824680pectate lyase family proteinF:lyase activity, pectate lyase activity;P:unknown;C:unknown;BPFOS.X.H.G.
0.4761.2At2g25310817069carbohydrate bindingF:carbohydrate binding;P:biological_process unknown;C:endomembrane system;MFPOBS.X.H.G.
0.4253.9At1g15370838106-F:molecular_function unknown;P:transport;C:unknown;POFS.X.H.G.
0.3846.7At2g21600816698ATRER1BKey player of retrieval of ER membrane proteinsS.X.H.G.
0.3032.1At1g75760843909ER lumen protein retaining receptor family proteinF:ER retention sequence binding, receptor activity;P:protein retention in ER lumen, protein transport;C:integral to membrane;MOPFS.X.H.G.
0.2217.5At2g18030816315peptide methionine sulfoxide reductase family proteinF:peptide-methionine-(S)-S-oxide reductase activity, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor;P:protein modification process, protein metabolic process;C:endomembrane system;BOMPFAVS.X.H.G.
0.168.8At4g02080827368ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2)A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.S.X.H.G.
0.157.8At3g48750824036CDC2 (CELL DIVISION CONTROL 2)A-type cyclin-dependent kinase. Together with its specific inhibitor, the Kip-related protein, KRP2 they regulate the mitosis-to-endocycle transition during leaf development. Dominant negative mutations abolish cell division. Loss of function phenotype has reduced fertility with failure to transmit via pollen. Pollen development is arrested at the second mitotic division. Expression is regulated by environmental and chemical signals. Part of the promoter is responsible for expression in trichomes. Functions as a positive regulator of cell proliferation during development of the male gametophyte, embryo and endosperm. Phosphorylation of threonine 161 is required for activation of its associated kinase.S.X.H.G.
0.157.8At3g54300824597ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)Encodes a member of Synaptobrevin -like protein family. VAMP727 is a R-SNARE and interacts with SYP22/VTI11/SYP51. It is required for trafficking of storage proteins to the protein storage vacuoles (PSV) and also for PSV organization and biogenesis. Loss of function mutations have no phenotype but double mutants with SYP22 are embryo lethal.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
39.799.8GSM142904WW002_ATH1_A1-willa-CON-REP2GSE6181Assembly of the cell wall pectic matrix.
22.699.6GSM142902WW001_ATH1_A1-WILLA-CONGSE6181Assembly of the cell wall pectic matrix.
17.199.5GSM142642MC002_ATH1_A7.2-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
15.499.5GSM142643MC002_ATH1_A7.3-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
13.099.4GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
12.999.3GSM134208Murray_3-4_D7-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cells
12.399.3GSM142641MC002_ATH1_A7.1-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
12.299.3GSM142906WW002_ATH1_A2-willa-ISOX-REP2GSE6181Assembly of the cell wall pectic matrix.
12.099.3GSM184891Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.683e-105383At4g27720828886-F:unknown;P:unknown;C:plasma membrane;BPMOFAC.G.S.X.
0.483e-58226At1g64650842773-F:unknown;P:unknown;C:plasma membrane;BPMOFAC.G.S.X.
0.021e-242At5g51130835187methyltransferaseF:methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;MBOPFC.G.S.X.
0.012e-138At3g56140824780unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid lumen, chloroplast;PBMOFVC.G.S.X.
0.017e-136At5g61140836235DEAD box RNA helicase, putativeEncodes a predicted protein with 30% identity with MER3/RCK.C.G.S.X.
0.017e-136At5g04020830281calmodulin bindingF:calmodulin binding;P:biological_process unknown;C:plasma membrane;OMBPFAVC.G.S.X.
0.017e-136At3g26030822200ATB' DELTAprotein phosphatase 2A regulatory subunit isoform B' deltaC.G.S.X.
0.017e-136At3g12360820414ITN1 (INCREASED TOLERANCE TO NACL)Encodes a protein with an ankyrin motif and transmembrane domains that is involved in salt tolerance. Expressed throughout the plant and localized to the plasma membrane. Loss of function mutations show an increased tolerance to salt based on assaying seedling growth in the presence of salt. In the mutants, induction of genes required for production of reactive oxygen species is reduced suggesting that itn1 promotes ROS production.C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.366e-42173Glycine maxGmaAffx.53495.1.S1_atBE330476--3e-64At4g27720-C.G.S.X.
0.335e-25115Hordeum vulgareContig9327_atContig9327--3e-34At1g64650-C.G.S.X.
0.291e-31139Oryza sativaOs10g0519600AK061924.1-Protein of unknown function DUF791 family protein8e-32At3g49310-C.G.S.X.
0.444e-46186Populus trichocarpaPtpAffx.5661.2.S1_s_atCV228504hypothetical protein-6e-113At4g27720-C.G.S.X.
0.211e-20101Triticum aestivumTa.6961.1.S1_atCA666763--4e-34At1g64650-C.G.S.X.
0.421e-1893Vitis vinifera1622721_atCF214391hypothetical protein LOC100267516-2e-88At4g27720-C.G.S.X.
0.162e-1169Zea maysZm.2962.1.S1_atCF045165hypothetical protein LOC100272424-7e-18At4g27720-C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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