Gene omics information

Query gene ID At3g49060
Gene name protein kinase family protein / U-box domain-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g49060824068protein kinase family protein / U-box domain-containing proteinF:in 6 functions;P:protein amino acid phosphorylation, protein ubiquitination;C:plasma membrane;MPOBFVAS.X.H.G.
0.4659.8At5g43900834412MYA2 (ARABIDOPSIS MYOSIN 2)Encodes a member of the type XI myosin protein family that binds F-actin and co-localizes with actin filaments and peroxisomes. Homozygous mutants are reported to have pleiotropic effects in growth and fertility and may also be lethal. This protein is also involved in root hair growth and organelle trafficking. This protein interacts with RabC2a and RabD1 in a GTP-dependent manner.S.X.H.G.
0.4659.8At4g11860826793-F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;MFOPBS.X.H.G.
0.4558.3At1g76850844020SEC5A (EXOCYST COMPLEX COMPONENT SEC5)F:molecular_function unknown;P:pollen germination, pollen tube growth;C:cytosol, plasma membrane;MFPOVBS.X.H.G.
0.4558.3At5g24450832516unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVS.X.H.G.
0.4558.3At2g27350817278OTU-like cysteine protease family proteinF:cysteine-type peptidase activity;P:biological_process unknown;C:chloroplast;OMPFBVS.X.H.G.
0.4457.2At1g18160838395protein kinase family proteinF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOFBVAS.X.H.G.
0.4355.3At3g17880821056ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN)Encodes a thioredoxin-like disulfide reductase. The protein interacts with the yeast Hsp70 protein Ssb2 in vitro. This interaction is sensitive to the redox status of the thioredoxin domain of AtTDX.S.X.H.G.
0.4152.4At1g16010838171magnesium transporter CorA-like family protein (MRS2-1)F:metal ion transmembrane transporter activity;P:metal ion transport;C:vacuole, membrane;PFOMBAS.X.H.G.
0.4050.8At1g17440838316EER4 (ENHANCED ETHYLENE RESPONSE 4)Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12. The gene product is an EIN3-interacting TFIID transcription factor required for proper ethylene response, including ERF1 induction. Loss of function mutants show enhanced response to ethylene. Located in nucleus and expressed throughout the plant. Required for ERF1 expression.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
67.899.9GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
43.399.8GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
41.099.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
36.599.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.499.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
34.599.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
30.899.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.599.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
28.199.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
27.499.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.055e-654At2g45910819199protein kinase family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVAC.G.S.X.
0.032e-242At2g45920819200U-box domain-containing proteinF:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;POMFBAVC.G.S.X.
0.013e-138At5g57035835807ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ ubiquitin-protein ligaseF:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVAC.G.S.X.
0.013e-138At4g13190826933ATP binding / kinase/ protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAC.G.S.X.
0.013e-138At3g02580820679STE1 (STEROL 1)Brassinosteroid biosynthetic enzyme, catalyzes delta7 sterol C-5 desaturation step. Mutant has dwarf phenotype.C.G.S.X.
0.013e-138At2g16400816137BLH7 (bell1-like homeodomain 7)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMFOBC.G.S.X.
0.023e-138At1g01660839461U-box domain-containing proteinF:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;MOBFPAVC.G.S.X.
0.011e+036At5g67260836861CYCD3Encode CYCD3;2, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development.C.G.S.X.
0.011e+036At5g59260836044lectin protein kinase, putativeF:protein serine/threonine kinase activity, sugar binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.041e-759Glycine maxGmaAffx.58176.1.S1_atBU577254--3e-1At2g39540gibberellin-regulated family proteinC.G.S.X.
0.016e-136Hordeum vulgareHK06I08r_atHK06I08r--3e+0At2g44198unknown proteinC.G.S.X.
0.022e-140Oryza sativaOs09g0570000AK058797.1-Protein kinase domain containing protein5e-5At1g01660U-box domain-containing proteinC.G.S.X.
0.053e-242Populus trichocarpaPtpAffx.202219.1.S1_atpmrna4442hypothetical protein-8e-8At2g45910protein kinase family protein / U-box domain-containing proteinC.G.S.X.
0.012e-242Triticum aestivumTa.6194.1.S1_atBJ299144--6e+0At5g48920TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)C.G.S.X.
0.051e-757Vitis vinifera1610925_atCF209806hypothetical protein LOC100267999-7e-8At3g49060protein kinase family protein / U-box domain-containing proteinC.G.S.X.
0.012e+034Zea maysZm.4650.2.S1_x_atAI691438Formate dehydrogenase2-4e+0At3g18773zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006468The process of introducing a phosphate group on to a protein.
LGO:0016567The process by which one or more ubiquitin moieties are added to a protein.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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