Gene omics information

Query gene ID At3g48970
Gene name copper-binding family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.135.8At3g48970824058copper-binding family proteinF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBOS.X.H.G.
0.8994.6At5g44440834471FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAMS.X.H.G.
0.7586.9At5g57240835830ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C)F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOPS.X.H.G.
0.6781.6At4g14130827051XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)xyloglucan endotransglycosylase-related protein (XTR7)S.X.H.G.
0.6075.7At4g35720829724unknown proteinF:unknown;P:unknown;C:unknown;POS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
125.099.9GSM133776Lindsey_1-1_globular-apical_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
87.399.9GSM131204AtGen_D-38_3-AL_REP3_ATH1GSE5617AtGenExpress: Light treatments
85.999.9GSM131210AtGen_D-44_3-RS_REP3_ATH1GSE5617AtGenExpress: Light treatments
83.799.9GSM131177AtGen_D-9_1-DS_REP1_ATH1GSE5617AtGenExpress: Light treatments
82.599.9GSM131208AtGen_D-42_3-FS_REP3_ATH1GSE5617AtGenExpress: Light treatments
80.899.9GSM131202AtGen_D-36_3-RL_REP3_ATH1GSE5617AtGenExpress: Light treatments
77.999.9GSM131205AtGen_D-39_3-UL_REP3_ATH1GSE5617AtGenExpress: Light treatments
76.899.9GSM131203AtGen_D-37_3-BL_REP3_ATH1GSE5617AtGenExpress: Light treatments
74.799.9GSM131207AtGen_D-41_3-DS_REP3_ATH1GSE5617AtGenExpress: Light treatments
74.699.9GSM134513Col-0_4day_dark_-lincomycin_rep1GSE5759red illumination w/o lincomycin
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.071e-550At3g568916240272metal ion bindingF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMBFOAC.G.S.X.
0.083e-342At4g39700830125heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PFBMC.G.S.X.
0.022e-136At4g11720826777HAP2 (HAPLESS 2)Encodes HAP2 with the following predicted motifs: an N-terminal secretion signal, a single transmembrane domain and a C-terminal histidine-rich domain. HAP2 is expressed only in the haploid sperm and is required for pollen tube guidance and fertilization. Predominantly localized to sperm endoplasmic reticulum membranes. May also reside in other endomembranes, including the plasma membrane.C.G.S.X.
0.012e-136At3g60330825204AHA7 (Arabidopsis H(+)-ATPase 7)F:hydrogen-exporting ATPase activity, phosphorylative mechanism;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane;BMOFPAVC.G.S.X.
0.038e-134At5g42700834279transcriptional factor B3 family proteinF:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PFC.G.S.X.
0.028e-134At4g13710827005pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOC.G.S.X.
0.018e-134At3g26560822264ATP-dependent RNA helicase, putativeF:in 6 functions;P:unknown;C:cytosol, mitochondrion;MOBFPVAC.G.S.X.
0.028e-134At1g79740844313DNA binding / protein dimerizationF:protein dimerization activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;POFMC.G.S.X.
0.023e+032At5g57460835851unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane, chloroplast;MPOFC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.051e+034Glycine maxGmaAffx.29696.1.S1_atBI699446--1e+0At3g48970copper-binding family proteinC.G.S.X.
0.056e+030Hordeum vulgarerbags13d01_s_atrbags13d01--4e+0At3g46380unknown proteinC.G.S.X.
0.033e-240Oryza sativaOs07g0298900AK064565.1-Heavy metal transport/detoxification proteindomain containing protein4e-2At3g48970copper-binding family proteinC.G.S.X.
0.263e-1375Populus trichocarpaPtpAffx.213092.1.S1_atpmrna25616hypothetical protein-2e-13At3g48970copper-binding family proteinC.G.S.X.
0.078e-134Triticum aestivumTaAffx.83124.1.S1_atCA661669--1e+0At3g48970copper-binding family proteinC.G.S.X.
0.046e-236Vitis vinifera1607903_atCF608166hypothetical protein LOC100267377-1e+0At1g67670unknown proteinC.G.S.X.
0.046e+030Zea maysZmAffx.787.1.A1_atAI759109EMB1417-5e-2At3g53820zinc finger (C2H2 type) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006825The directed movement of copper (Cu) ions into, out of, within or between cells.
LGO:0030001The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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