CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g48920

Gene name AtMYB45 (myb domain protein 45)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.46 59.8 At3g48920 824053 AtMYB45 (myb domain protein 45) Member of the R2R3 factor gene family. S.X. H.G.
0.44 57.2 At5g54040 835487 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOF S.X. H.G.
0.26 24.4 At5g48175 834870 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.21 15.8 At5g38540 833842 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.17 10.2 At1g51420 841567 SPP1 (SUCROSE-PHOSPHATASE 1) F:phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity;P:sucrose biosynthetic process, metabolic process;C:plasma membrane;BPO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
294.2 100.0 GSM184845 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
282.2 100.0 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
189.8 100.0 GSM184520 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
154.1 99.9 E-MEXP-1474-raw-cel-1593932865
153.5 99.9 GSM184517 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
144.6 99.9 GSM184519 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
143.3 99.9 E-MEXP-1474-raw-cel-1593932929
118.8 99.9 GSM184846 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
116.3 99.9 E-MEXP-1474-raw-cel-1593932801
100.9 99.9 E-MEXP-1474-raw-cel-1593932833
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.17 3e-11 69 At5g52260 835302 AtMYB19 (myb domain protein 19) Member of the R2R3 factor gene family. C.G. S.X.
0.19 1e-10 67 At4g25560 828661 AtMYB18 (myb domain protein 18) Member of the R2R3 factor gene family. C.G. S.X.
0.04 7e-9 61 At5g49620 835024 AtMYB78 (myb domain protein 78) Member of the R2R3 factor gene family. C.G. S.X.
0.03 1e-7 57 At5g65790 836708 MYB68 (MYB DOMAIN PROTEIN 68) Encodes a putative MYB transcription factor. C.G. S.X.
0.04 1e-7 57 At4g05100 825855 AtMYB74 (myb domain protein 74) Member of the R2R3 factor gene family. C.G. S.X.
0.05 2e-6 54 At5g62320 836353 ATMYB99 (MYB DOMAIN PROTEIN 99) Encodes a putative transcription factor (MYB99). C.G. S.X.
0.07 2e-6 54 At5g26660 832723 ATMYB86 (MYB DOMAIN PROTEIN 86) a MYB gene encodes a transcriptional repressor of the C4H gene which is involved in the biosynthesis of sinapate esters. C.G. S.X.
0.04 2e-6 54 At4g37780 829934 MYB87 (MYB DOMAIN PROTEIN 87) "encoded by the Myb-like transcription factor MYB87, regulates axillary meristem formation, expressed throughout the plant. Member of the R2R3 factor gene family." C.G. S.X.
0.05 2e-6 54 At4g13480 826980 AtMYB79 (myb domain protein 79) Member of the R2R3 factor gene family. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 9e-6 52 Glycine max GmaAffx.62509.2.S1_at BE021475 MYB transcription factor MYB94 - 9e-13 At5g52260 AtMYB19 (myb domain protein 19) C.G. S.X.
0.03 7e-1 34 Hordeum vulgare Contig17135_s_at Contig17135 - - 7e-1 At5g53590 auxin-responsive family protein C.G. S.X.
0.04 5e-2 40 Oryza sativa Os08g0151300 AK111808.1 - Myb, DNA-binding domain containing protein 2e-20 At1g63910 AtMYB103 (myb domain protein 103) C.G. S.X.
0.20 4e-8 59 Populus trichocarpa PtpAffx.213085.1.S1_at pmrna25605 hypothetical protein - 7e-13 At5g52260 AtMYB19 (myb domain protein 19) C.G. S.X.
0.04 4e-1 36 Triticum aestivum Ta.18675.1.S1_at CA632309 - - 2e-4 At5g12870 MYB46 (MYB DOMAIN PROTEIN 46) C.G. S.X.
0.06 3e-2 38 Vitis vinifera 1619579_at AB073014.1 - - 4e-13 At1g22640 MYB3 (MYB DOMAIN PROTEIN 3) C.G. S.X.
0.03 3e+0 32 Zea mays Zm.8849.1.A1_at BM351262 - - 1e+0 At1g48500 JAZ4 (JASMONATE-ZIM-DOMAIN PROTEIN 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009751 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus.
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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