CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g48890

Gene name ATMP2

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.12 4.9 At3g48890 824050 ATMP2 putative progesterone-binding protein homolog (Atmp2) mRNA, S.X. H.G.
0.50 65.3 At3g54640 824629 TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN) Catalyzes the conversion of indole-3-glycerolphosphate to indole, the penultimate reaction in the biosynthesis of tryptophan. Functions as a heterocomplex with tryptophan synthase beta subunit (TSA2). S.X. H.G.
0.44 57.2 At1g10700 837613 ribose-phosphate pyrophosphokinase 3 / phosphoribosyl diphosphate synthetase 3 (PRS3) F:magnesium ion binding, ribose phosphate diphosphokinase activity;P:cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process;C:chloroplast;BOMFAPV S.X. H.G.
0.43 55.3 At2g04400 814980 indole-3-glycerol phosphate synthase (IGPS) F:indole-3-glycerol-phosphate synthase activity;P:tryptophan biosynthetic process;C:chloroplast;BOAFP S.X. H.G.
0.40 50.8 At2g24180 816952 CYP71B6 (CYTOCHROME P450 71B6) cytochrome P450 monooxygenase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
52.6 99.8 GSM133030 BC482-2 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
46.9 99.8 GSM133029 BC482-1 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
42.8 99.8 E-MEXP-546-raw-cel-863289532
39.3 99.8 E-MEXP-546-raw-cel-863289424
38.5 99.8 GSM133025 BC181-1 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
38.3 99.8 E-MEXP-711-raw-cel-1563002768
33.7 99.7 E-MEXP-546-raw-cel-863289476
33.0 99.7 E-MEXP-711-raw-cel-1563002902
32.6 99.7 GSM131161 AtGen_C-11_2-Pi-6_REP2_ATH1 GSE5616 AtGenExpress: Response to Phytophthora infestans
31.6 99.7 GSM142837 MG001_ATH1_A16-Torres-6N1 GSE6176 Impact of Type III effectors on plant defense responses
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.38 5e-59 228 At5g52240 835300 MSBP1 (membrane steroid binding protein 1) Encodes a protein with similarity to progesterone-binding proteins in animals. Has been shown to bind steroids in vitro. Expressed in aerial portions of the plant excluding mature flowers and siliques. Antisense experiments suggest a role in inhibition of hypocotyl cell elongation. Expression is suppressed light grown seedlings transferred to the dark. C.G. S.X.
0.02 2e-2 40 At5g16560 831518 KAN (KANADI) Encodes a KANADI protein (KAN) that regulates organ polarity in Arabidopsis. KAN is required for abaxial identity in both leaves and carpels, and encodes a nuclear-localized protein in the GARP family of putative transcription factors. Together with KAN2, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN2 and KAN4, KAN1 appears to be required for proper regulation of PIN1 in early embryogenesis. C.G. S.X.
0.02 2e-2 40 At4g35140 829666 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:unknown;C:unknown;MBFOPA C.G. S.X.
0.02 2e-2 40 At3g19760 821513 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:nucleolus, nucleus, membrane;BOMFPAV C.G. S.X.
0.02 3e-1 36 At5g03060 831678 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPAV C.G. S.X.
0.01 3e-1 36 At3g43670 823469 copper amine oxidase, putative F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA C.G. S.X.
0.01 3e-1 36 At1g70620 843399 cyclin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.01 3e-1 36 At1g28530 839753 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.37 4e-23 109 Glycine max GmaAffx.90559.1.S1_x_at CF806284 - - 2e-23 At3g48890 ATMP2 C.G. S.X.
0.22 5e-11 67 Hordeum vulgare Contig10724_at Contig10724 - - 1e-10 At3g48890 ATMP2 C.G. S.X.
0.21 6e-26 119 Oryza sativa Os10g0502600 AK069511.1 - Cytochrome b5 domain containing protein 4e-26 At3g48890 ATMP2 C.G. S.X.
0.21 3e-27 123 Populus trichocarpa Ptp.2453.1.S1_at CV284013 hypothetical protein - 2e-28 At5g52240 MSBP1 (membrane steroid binding protein 1) C.G. S.X.
0.22 1e-10 67 Triticum aestivum Ta.6101.1.S1_at CD937323 - - 2e-10 At3g48890 ATMP2 C.G. S.X.
0.41 2e-43 174 Vitis vinifera 1609309_at CF568890 - - 4e-43 At3g48890 ATMP2 C.G. S.X.
0.20 2e-10 65 Zea mays Zm.14411.2.S1_at AY104410.1 membrane steroid-binding protein 1 - 6e-10 At3g48890 ATMP2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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