Gene omics information

Query gene ID At3g48890
Gene name ATMP2
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.124.9At3g48890824050ATMP2putative progesterone-binding protein homolog (Atmp2) mRNA,S.X.H.G.
0.5065.3At3g54640824629TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)Catalyzes the conversion of indole-3-glycerolphosphate to indole, the penultimate reaction in the biosynthesis of tryptophan. Functions as a heterocomplex with tryptophan synthase beta subunit (TSA2).S.X.H.G.
0.4457.2At1g10700837613ribose-phosphate pyrophosphokinase 3 / phosphoribosyl diphosphate synthetase 3 (PRS3)F:magnesium ion binding, ribose phosphate diphosphokinase activity;P:cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process;C:chloroplast;BOMFAPVS.X.H.G.
0.4355.3At2g04400814980indole-3-glycerol phosphate synthase (IGPS)F:indole-3-glycerol-phosphate synthase activity;P:tryptophan biosynthetic process;C:chloroplast;BOAFPS.X.H.G.
0.4050.8At2g24180816952CYP71B6 (CYTOCHROME P450 71B6)cytochrome P450 monooxygenaseS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
52.699.8GSM133030BC482-2GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
46.999.8GSM133029BC482-1GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
38.599.8GSM133025BC181-1GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
32.699.7GSM131161AtGen_C-11_2-Pi-6_REP2_ATH1GSE5616AtGenExpress: Response to Phytophthora infestans
31.699.7GSM142837MG001_ATH1_A16-Torres-6N1GSE6176Impact of Type III effectors on plant defense responses
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.385e-59228At5g52240835300MSBP1 (membrane steroid binding protein 1)Encodes a protein with similarity to progesterone-binding proteins in animals. Has been shown to bind steroids in vitro. Expressed in aerial portions of the plant excluding mature flowers and siliques. Antisense experiments suggest a role in inhibition of hypocotyl cell elongation. Expression is suppressed light grown seedlings transferred to the dark.C.G.S.X.
0.022e-240At5g16560831518KAN (KANADI)Encodes a KANADI protein (KAN) that regulates organ polarity in Arabidopsis. KAN is required for abaxial identity in both leaves and carpels, and encodes a nuclear-localized protein in the GARP family of putative transcription factors. Together with KAN2, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN2 and KAN4, KAN1 appears to be required for proper regulation of PIN1 in early embryogenesis.C.G.S.X.
0.022e-240At4g35140829666transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:unknown;C:unknown;MBFOPAC.G.S.X.
0.022e-240At3g19760821513eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putativeF:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:nucleolus, nucleus, membrane;BOMFPAVC.G.S.X.
0.023e-136At5g03060831678unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPAVC.G.S.X.
0.013e-136At3g43670823469copper amine oxidase, putativeF:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPAC.G.S.X.
0.013e-136At1g70620843399cyclin-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.013e-136At1g28530839753unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;PC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.374e-23109Glycine maxGmaAffx.90559.1.S1_x_atCF806284--2e-23At3g48890ATMP2C.G.S.X.
0.225e-1167Hordeum vulgareContig10724_atContig10724--1e-10At3g48890ATMP2C.G.S.X.
0.216e-26119Oryza sativaOs10g0502600AK069511.1-Cytochrome b5 domain containing protein4e-26At3g48890ATMP2C.G.S.X.
0.213e-27123Populus trichocarpaPtp.2453.1.S1_atCV284013hypothetical protein-2e-28At5g52240MSBP1 (membrane steroid binding protein 1)C.G.S.X.
0.221e-1067Triticum aestivumTa.6101.1.S1_atCD937323--2e-10At3g48890ATMP2C.G.S.X.
0.412e-43174Vitis vinifera1609309_atCF568890--4e-43At3g48890ATMP2C.G.S.X.
0.202e-1065Zea maysZm.14411.2.S1_atAY104410.1membrane steroid-binding protein 1-6e-10At3g48890ATMP2C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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