CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g48860

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g48860 824047 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane;MOFBPAV S.X. H.G.
0.40 50.8 At3g49490 824111 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;OMFBP S.X. H.G.
0.39 48.4 At3g52850 824451 VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1) Encodes the Vacuolar Sorting Receptor-1 (VSR-1)/Epidermal Growth Factor Receptor-like protein1(VSR-1/ATELP1). Binds vacuolar targeting signals. Involved in sorting seed storage proteins into vacuoles. S.X. H.G.
0.38 46.7 At2g43210 818922 UBX domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV S.X. H.G.
0.34 39.8 At1g32130 840105 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA S.X. H.G.
0.32 35.7 At1g75850 843918 VPS35B (VPS35 HOMOLOG B) F:unknown;P:intracellular protein transport, retrograde transport, endosome to Golgi;C:cellular_component unknown;MFOPB S.X. H.G.
0.32 35.7 At3g58640 825033 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.30 32.1 At3g27670 822389 RST1 (RESURRECTION1) A novel protein, did not show high similarity to any protein of known function; reveals a novel genetic connection between lipid synthesis and embryo development. Expressed in all tissues examined including leaves, flowers, roots, stems, and siliques, but accumulation levels were not correlated with the degree to which different organs appeared affected by the mutation. Mutant plants showed alterations in the cuticular wax profiles and embryo development. S.X. H.G.
0.29 30.3 At1g05090 839327 dentin sialophosphoprotein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPAV S.X. H.G.
0.29 30.3 At3g45830 823726 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
63.3 99.8 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
37.1 99.7 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
29.7 99.7 GSM142646 MC002_ATH1_A8.3-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
24.1 99.6 GSM142642 MC002_ATH1_A7.2-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
23.1 99.6 GSM142625 MC002_ATH1_A1.3-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
22.1 99.6 GSM142643 MC002_ATH1_A7.3-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
19.0 99.5 GSM142644 MC002_ATH1_A8.1-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
18.8 99.5 GSM133961 Fukuda_1-6_4B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
18.8 99.5 GSM142645 MC002_ATH1_A8.2-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
17.8 99.5 GSM133957 Fukuda_1-2_0B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.48 6e-54 212 At5g23700 832435 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.17 9e-13 75 At5g13260 831167 unknown protein F:unknown;P:biological_process unknown;C:unknown;MFOPBAV C.G. S.X.
0.17 8e-10 65 At4g25070 828610 unknown protein F:unknown;P:unknown;C:unknown;MOBFPAV C.G. S.X.
0.03 3e-6 54 At4g08630 826428 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFPBV C.G. S.X.
0.02 2e-4 48 At3g53310 824499 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MBOFPV C.G. S.X.
0.02 2e-4 48 At2g42710 818871 ribosomal protein L1 family protein F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:ribosome, intracellular, large ribosomal subunit;BOMFPAV C.G. S.X.
0.03 3e-3 44 At5g24890 832558 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 2e-14 81 Glycine max GmaAffx.77917.1.S1_at BU965283 - - 1e-26 At5g13260 unknown protein C.G. S.X.
0.09 4e-16 85 Hordeum vulgare Contig15613_at Contig15613 - - 7e-16 At3g48860 unknown protein C.G. S.X.
0.14 7e-12 73 Oryza sativa Os01g0928100 AK120714.1 - Conserved hypothetical protein 5e-12 At3g48860 unknown protein C.G. S.X.
0.30 6e-27 123 Populus trichocarpa PtpAffx.212921.1.S1_s_at pmrna25278 hypothetical protein - 4e-27 At3g48860 unknown protein C.G. S.X.
0.14 9e-10 65 Triticum aestivum Ta.9619.1.S1_a_at CD908424 - - 8e-10 At3g48860 unknown protein C.G. S.X.
0.07 5e-27 121 Vitis vinifera 1612854_at CB974875 hypothetical protein LOC100256039 - 1e-26 At3g48860 unknown protein C.G. S.X.
0.02 1e+0 34 Zea mays Zm.9120.1.A1_at BM348766 - - 9e-2 At3g25572 CPuORF11 (Conserved peptide upstream open reading frame 11) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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