CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g48700

Gene name ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.54 69.5 At3g48700 824031 ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13) F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAV S.X. H.G.
0.69 82.9 At1g48660 841288 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMF S.X. H.G.
0.69 82.9 At5g14450 831296 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOM S.X. H.G.
0.67 81.6 At1g33790 840271 jacalin lectin family protein F:unknown;P:biological_process unknown;C:chloroplast;PO S.X. H.G.
0.67 81.6 At2g40220 818614 ABI4 (ABA INSENSITIVE 4) encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings. S.X. H.G.
0.65 79.6 At1g80340 844374 GA3OX2 (GIBBERELLIN 3-OXIDASE 2) Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20. S.X. H.G.
0.64 78.9 At5g03860 831690 MLS (MALATE SYNTHASE) Encodes a protein with malate synthase activity. S.X. H.G.
0.63 78.1 At1g72570 843589 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBV S.X. H.G.
0.62 77.3 At2g47780 819390 rubber elongation factor (REF) protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.59 74.7 At3g21720 821726 ICL (ISOCITRATE LYASE) Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
125.0 99.9 GSM153928 ahg3-1 rep1 GSE6638 Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
115.2 99.9 GSM153924 ABA control rep1 GSE6638 Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
115.1 99.9 GSM153926 ahg1-1 rep1 GSE6638 Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
111.3 99.9 GSM305281 control, biological replicate 1 GSE12137 LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis thaliana
97.9 99.9 GSM142695 MH001_ATH1_A9-grevi-CT3 GSE6158 Investigating the links between organic acid and carbohydrate regulation of gene expression.
87.2 99.9 GSM153925 ABA control rep2 GSE6638 Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
81.7 99.9 GSM173651 mARF10 rep3 GSE7227 microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
79.3 99.9 GSM299331 pkl Mutant Germinating Seeds With Solvent Treatment Only Set 5 of 6 GSE11852 Effect of uniconazole on wt and pkl mutant germinating seeds
77.9 99.9 GSM299324 Wild Type Germinating Seeds With Solvent Treatment Only Set 4 of 6 GSE11852 Effect of uniconazole on wt and pkl mutant germinating seeds
77.8 99.9 GSM299332 pkl Mutant Germinating Seeds With Solvent Treatment Only Set 6 of 6 GSE11852 Effect of uniconazole on wt and pkl mutant germinating seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.75 0 735 At3g48690 824030 CXE12 Encodes a protein with carboxylesterase whose activity was tested using both pNA and 2,4-D-methyl. C.G. S.X.
0.28 2e-19 97 At1g19190 838502 hydrolase F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOPMFAV C.G. S.X.
0.14 6e-16 85 At1g49660 841390 AtCXE5 (Arabidopsis thaliana carboxyesterase 5) Encodes a protein with carboxylesterase whose activity was tested using pNA. C.G. S.X.
0.28 4e-14 79 At2g03550 814884 hydrolase F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAV C.G. S.X.
0.05 3e-5 50 At5g16080 831465 AtCXE17 (Arabidopsis thaliana carboxyesterase 17) F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAV C.G. S.X.
0.07 3e-5 50 At1g49640 841388 hydrolase F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOPFMAV C.G. S.X.
0.12 2e-3 44 At1g49650 841389 cell death associated protein-related F:hydrolase activity;P:metabolic process;C:unknown;BOPFMAV C.G. S.X.
0.03 3e-2 40 At2g40080 818596 ELF4 (EARLY FLOWERING 4) Encodes a novel nuclear 111 amino-acid phytochrome-regulated component of a negative feedback loop involving the circadian clock central oscillator components CCA1 and LHY. ELF4 is necessary for light-induced expression of both CCA1 and LHY, and conversely, CCA1 and LHY act negatively on light-induced ELF4 expression. ELF4 promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. It is involved in the phyB-mediated constant red light induced seedling de-etiolation process and may function to coregulate the expression of a subset of phyB-regulated genes. C.G. S.X.
0.02 1e-1 38 At1g78110 844147 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;OMFVPBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 7e-1 36 Glycine max GmaAffx.56475.1.S1_at BG156924 - - 3e-1 At3g48700 ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13) C.G. S.X.
0.02 9e-1 34 Hordeum vulgare HM08F17r_at HM08F17r - - 1e+0 At5g33210 SRS8 (SHI-RELATED SEQUENCE 8) C.G. S.X.
0.03 2e-1 38 Oryza sativa Os09g0435600 9637.m02311 - - 1e-1 At3g48700 ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13) C.G. S.X.
0.03 2e-1 38 Populus trichocarpa Ptp.2468.1.S1_at BU837274 hypothetical protein - 3e-9 At1g19190 hydrolase C.G. S.X.
0.04 2e+0 34 Triticum aestivum TaAffx.11891.1.S1_at BJ315725 - - 1e-9 At1g49640 hydrolase C.G. S.X.
0.02 1e-1 36 Vitis vinifera 1615633_at CA813996 hypothetical protein LOC100243547 - 1e-7 At2g03550 hydrolase C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.1120.1.A1_at AW267424 hypothetical protein LOC100191516 - 8e-1 At2g23610 MES3 (METHYL ESTERASE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00422 Carbohydrate esterases

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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