CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g48450

Gene name nitrate-responsive NOI protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g48450 824004 nitrate-responsive NOI protein, putative F:molecular_function unknown;P:response to nitrate;C:cellular_component unknown;PO S.X. H.G.
0.73 85.5 At3g13660 820570 disease resistance response F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cellular_component unknown;P S.X. H.G.
0.68 82.2 At2g46360 819243 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.60 75.7 At4g24640 828566 APPB1 Encodes AppB protein (AppB1). S.X. H.G.
0.56 73.0 At2g26850 817226 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO S.X. H.G.
0.56 73.0 At1g51240 841547 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.55 70.6 At3g26110 822209 - F:molecular_function unknown;P:unknown;C:anchored to membrane;P S.X. H.G.
0.55 70.6 At5g46770 834720 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.52 67.4 At2g32460 817807 MYB101 Member of the R2R3 factor gene family. S.X. H.G.
0.52 67.4 At3g25165 822108 RALFL25 (ralf-like 25) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
153.2 99.9 GSM154503 Arabidopsis desiccated mature pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
122.8 99.9 GSM154505 Arabidopsis hydrated pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
108.7 99.9 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
97.5 99.9 E-MEXP-1138-raw-cel-1432772714
86.3 99.9 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
83.3 99.9 GSM154504 Arabidopsis desiccated mature pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
83.1 99.9 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
82.5 99.9 E-MEXP-509-raw-cel-829148561
81.5 99.9 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
75.3 99.9 E-MEXP-1138-raw-cel-1432772746
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.31 6e-10 63 At5g63270 836447 nitrate-responsive NOI protein, putative F:molecular_function unknown;P:response to nitrate;C:cellular_component unknown;PO C.G. S.X.
0.08 2e-3 42 At5g55850 835679 NOI NOI protein C.G. S.X.
0.11 8e-3 40 At5g40645 834064 nitrate-responsive NOI protein, putative F:molecular_function unknown;P:response to nitrate;C:cellular_component unknown;PO C.G. S.X.
0.10 3e-2 38 At2g17660 816273 nitrate-responsive NOI protein, putative F:molecular_function unknown;P:response to nitrate;C:cellular_component unknown;PO C.G. S.X.
0.03 1e-1 36 At2g32080 817768 PUR ALPHA-1 similar to the conserved animal nuclear protein PUR alpha which was implicated in the control of gene transcription and DNA replication C.G. S.X.
0.02 1e-1 36 At1g68600 843190 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPFO C.G. S.X.
0.01 5e-1 34 At5g51800 835255 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOBVA C.G. S.X.
0.17 5e-1 34 At4g35655 5008182 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-1 36 Glycine max HgAffx.18636.1.S1_at CA940544 - - 2e-1 At3g48450 nitrate-responsive NOI protein, putative C.G. S.X.
0.06 1e-6 52 Hordeum vulgare Contig22871_at Contig22871 - - 4e-16 At2g04410 - C.G. S.X.
0.23 2e-2 40 Oryza sativa OsAffx.17596.1.S1_at - - - 0 C.G. S.X.
0.13 5e-5 48 Populus trichocarpa PtpAffx.14176.3.S1_at CV248667 - - 3e-19 At5g55850 NOI C.G. S.X.
0.06 1e-1 36 Triticum aestivum TaAffx.85565.1.S1_at CA621671 - - 2e-8 At2g04410 - C.G. S.X.
0.06 4e-5 46 Vitis vinifera 1612136_at CF514670 - - 3e-17 At5g55850 NOI C.G. S.X.
0.07 3e+0 30 Zea mays ZmAffx.737.1.A1_at AI740079 ras-related protein Rab11C /// ras-related protein Rab11C - 8e-1 At5g53590 auxin-responsive family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0010167 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrate stimulus.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage