CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g48350

Gene name cysteine proteinase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.26 24.4 At3g48350 823993 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF S.X. H.G.
0.40 50.8 At1g18870 838468 ICS2 (ISOCHORISMATE SYNTHASE 2) Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene's function suggest that its function is redundant with that of ICS1 (AT1G7410). S.X. H.G.
0.13 5.8 At5g04530 830332 KCS19 (3-KETOACYL-COA SYNTHASE 19) Encodes KCS19, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). S.X. H.G.
0.10 3.4 At4g34250 829574 KCS16 (3-KETOACYL-COA SYNTHASE 16) Encodes KCS16, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). S.X. H.G.
0.08 2.3 At1g72140 843545 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport, response to nematode;C:plasma membrane, membrane;BPMOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
170.2 100.0 GSM131173 AtGen_D-5_1-BL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
165.6 100.0 GSM131203 AtGen_D-37_3-BL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
151.2 99.9 GSM131185 AtGen_D-18_2-FL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
135.4 99.9 GSM131200 AtGen_D-34_3-FL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
132.4 99.9 GSM131188 AtGen_D-21_2-BL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
131.3 99.9 GSM131170 AtGen_D-2_1-FL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
120.6 99.9 GSM131176 AtGen_D-8_1-WL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
104.2 99.9 GSM131206 AtGen_D-40_3-WL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
94.5 99.9 GSM131191 AtGen_D-24_2-WL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
84.8 99.9 GSM131175 AtGen_D-7_1-UL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.35 5e-23 109 At3g48340 823992 cysteine-type endopeptidase/ cysteine-type peptidase F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:unknown;MOPVBAF C.G. S.X.
0.09 2e-10 67 At3g19400 821474 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF C.G. S.X.
0.05 6e-10 65 At1g20850 838677 XCP2 (xylem cysteine peptidase 2) F:peptidase activity, cysteine-type peptidase activity;P:proteolysis, developmental programmed cell death;C:cell wall;MOPVBAF C.G. S.X.
0.16 4e-8 59 At5g50260 835091 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF C.G. S.X.
0.06 4e-8 59 At4g36880 829841 CP1 (CYSTEINE PROTEINASE1) F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAF C.G. S.X.
0.04 4e-5 50 At3g49340 824096 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:unknown;MOPVBAF C.G. S.X.
0.03 9e-3 42 At2g34080 817969 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF C.G. S.X.
0.06 9e-3 42 At1g47128 841122 RD21 (responsive to dehydration 21) cysteine proteinase precursor-like protein/ dehydration stress-responsive gene (RD21) C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 5e-8 59 Glycine max Gma.4591.1.S1_at AB092555.1 cysteine proteinase - 5e-14 At5g50260 cysteine proteinase, putative C.G. S.X.
0.02 4e+0 32 Hordeum vulgare HV_CEb0013N24r2_at HV_CEb0013N24r2 - - 2e-2 At3g50550 unknown protein C.G. S.X.
0.05 2e-8 61 Oryza sativa Os02g0715000 AK060534.1 - Cysteine proteinase GP-II (EC 3.4.22.-) 4e-5 At1g20850 XCP2 (xylem cysteine peptidase 2) C.G. S.X.
0.14 1e-8 61 Populus trichocarpa PtpAffx.72551.1.S1_at CV231269 hypothetical protein - 1e-20 At5g50260 cysteine proteinase, putative C.G. S.X.
0.03 9e+0 32 Triticum aestivum TaAffx.81638.1.S1_at BE217029 - - 5e-4 At3g49340 cysteine proteinase, putative C.G. S.X.
0.19 2e-10 65 Vitis vinifera 1608456_at CB971487 hypothetical protein LOC100250141 - 4e-14 At5g50260 cysteine proteinase, putative C.G. S.X.
0.03 2e-7 56 Zea mays Zm.7736.1.S1_at AF019146.1 maize insect resistance2 - 4e-3 At2g34080 cysteine proteinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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