Gene omics information

Query gene ID At3g48110
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4862.5At3g48110823966EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1)glycine-tRNA ligaseS.X.H.G.
0.6781.6At3g10160820179DFC (DHFS-FPGS HOMOLOG C)Encodes a protein with tetrahydrofolylpolyglutamate synthase activity that is located in the mitochondrial matrix.S.X.H.G.
0.5065.3At5g35210833475peptidase M50 family protein / sterol-regulatory element binding protein (SREBP) site 2 protease family proteinF:protein binding, DNA binding, metalloendopeptidase activity, zinc ion binding;P:proteolysis, regulation of transcription, DNA-dependent;C:nucleus, chloroplast envelope;MPOFBAS.X.H.G.
0.4457.2At5g16715831533EMB2247 (embryo defective 2247)F:valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:chloroplast stroma, chloroplast;OBMAFPS.X.H.G.
0.4355.3At2g41720818771EMB2654 (EMBRYO DEFECTIVE 2654)F:unknown;P:embryonic development ending in seed dormancy;C:unknown;POMFBAS.X.H.G.
0.4050.8At3g02450821139cell division protein ftsH, putativeF:in 6 functions;P:unknown;C:integral to membrane, chloroplast;BOMFPAVS.X.H.G.
0.3338.1At3g03710821181RIF10 (resistant to inhibition with FSM 10)Mutants impaired in the expression of this gene have been selected through their resistance to fosmidomycin, a strong inhibitor of DXR, an enzyme of the methylerythritol-dependent IPP biosynthesis pathway. The pathway enzymes were upregulated in the mutant seedlings.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
17.599.5GSM131471ATGE_7_A2GSE5629AtGenExpress: Developmental series (seedlings and whole plants)
14.399.4GSM131472ATGE_7_B2GSE5629AtGenExpress: Developmental series (seedlings and whole plants)
13.599.4GSM318621Apex_mir-3TCP_14DAS_2GSE12691Knockdown and overexpression of CIN-TCP genes
11.899.3GSM318619Apex_Col_14DAS_2GSE12691Knockdown and overexpression of CIN-TCP genes
11.599.3GSM318620Apex_mir-3TCP_14DAS_1GSE12691Knockdown and overexpression of CIN-TCP genes
11.199.2GSM131473ATGE_7_C2GSE5629AtGenExpress: Developmental series (seedlings and whole plants)
10.699.2GSM318331EL_14DAS_2GSE12676Arabidopsis thaliana Ler developmental series
9.899.1GSM318618Apex_Col_14DAS_1GSE12691Knockdown and overexpression of CIN-TCP genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.014e-138At5g50280835093EMB1006 (embryo defective 1006)F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;POMFBAC.G.S.X.
0.014e-138At3g60530825224zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOMC.G.S.X.
0.014e-138At3g60350825206armadillo/beta-catenin repeat family protein / F-box family proteinARABIDILLO-2 and its homolog, ARABIDILLO -1, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-2 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-2-overexpressing lines produce more lateral roots than wild-type seedlings.C.G.S.X.
0.012e+036At5g58630835977unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFC.G.S.X.
0.012e+036At5g60680836189unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMC.G.S.X.
0.012e+036At5g66770836810scarecrow transcription factor family proteinF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMBFOC.G.S.X.
0.012e+036At4g35120829664kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPVBOFAC.G.S.X.
0.012e+036At3g25500822136AFH1 (FORMIN HOMOLOGY 1)Poly-L-proline-containing (PLP) protein that form part of the signal-transduction cascade that leads to rearrangement of the actin cytoskeleton. AFH1 is a nonprocessive formin that moves from the barbered end to the side of an actin filament after the nucleation event.C.G.S.X.
0.012e+036At3g51990824362protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e-554Glycine maxGma.16326.1.S1_atCD401278--4e+0At5g55893unknown proteinC.G.S.X.
0.015e-240Hordeum vulgareHV08I08u_atHV08I08u--4e+0At5g10310unknown proteinC.G.S.X.
0.221e-45186Oryza sativaOs06g0103600AK072800.1-Aminoacyl-t-RNA synthetase precursor8e-46At3g48110EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1)C.G.S.X.
0.077e-1377Populus trichocarpaPtpAffx.24990.1.A1_atCV235351--1e-13At3g48110EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1)C.G.S.X.
0.012e+036Triticum aestivumTa.13960.1.A1_atBQ752812--2e+0At5g64110peroxidase, putativeC.G.S.X.
0.104e-26119Vitis vinifera1613561_atCF513104hypothetical protein LOC100246137-4e-26At3g48110EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1)C.G.S.X.
0.017e-136Zea maysZm.12428.1.S1_atCK145039Growth-regulating factor 4-like-5e-2At2g45480AtGRF9 (GROWTH-REGULATING FACTOR 9)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009793The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
XGO:0045995Any process that modulates the frequency, rate or extent of embryonic development.
CGO:0006426The process of coupling glycine to glycyl-tRNA, catalyzed by glycyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00067Link to KaPPA-View 4tRNA-charging-pathway

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00970Link to KEGG PATHWAYAminoacyl-tRNA biosynthesis
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