Gene omics information

Query gene ID At3g48100
Gene name ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g48100823965ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5)Encodes a transcription repressor that mediates a negative feedback loop in cytokinin signalling. ARR5 expression is upregulated by Class I KNOX genes. Arr5 protein is stabilized by cytokinin in a two-component phosphorelay.S.X.H.G.
0.7586.9At5g62920836412ARR6 (RESPONSE REGULATOR 6)Encodes a Type-A response regulator that is responsive to cytokinin treatment. Its C-ter domain is very short in comparison to other Arabidopsis ARRs (17 total). Arr6 protein is stabilized by cytokinin.S.X.H.G.
0.2930.3At3g48750824036CDC2 (CELL DIVISION CONTROL 2)A-type cyclin-dependent kinase. Together with its specific inhibitor, the Kip-related protein, KRP2 they regulate the mitosis-to-endocycle transition during leaf development. Dominant negative mutations abolish cell division. Loss of function phenotype has reduced fertility with failure to transmit via pollen. Pollen development is arrested at the second mitotic division. Expression is regulated by environmental and chemical signals. Part of the promoter is responsible for expression in trichomes. Functions as a positive regulator of cell proliferation during development of the male gametophyte, embryo and endosperm. Phosphorylation of threonine 161 is required for activation of its associated kinase.S.X.H.G.
0.1811.4At3g57040824871ARR9 (RESPONSE REGULATOR 9)response regulator ARR9, A two-component response regulator-like protein with a receiver domain with a conserved aspartate residue and a possible phosphorylation site and at the N-terminal half. Appears to interact with histidine kinase like genes ATHP3 and ATHP2S.X.H.G.
0.061.4At1g10470837587ARR4 (RESPONSE REGULATOR 4)Encodes a two-component response regulator. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.S.X.H.G.
0.051.1At4g02080827368ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2)A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
199.7100.0GSM133945Murray_2-1_T0-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
100.999.9GSM142592DB001_ATH1_A2-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cells
82.799.9GSM142593DB001_ATH1_A3-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cells
69.799.9GSM133301NO.26GSE5699AtGenExpress: ARR21C overexpression
58.699.8GSM133300NO.25GSE5699AtGenExpress: ARR21C overexpression
56.999.8GSM133302NO.27GSE5699AtGenExpress: ARR21C overexpression
48.799.8E-ATMX-13-raw-cel-1556149903
37.899.8E-ATMX-3-raw-cel-1161357872
33.499.7GSM134202Murray_3-1_D1-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cells
32.599.7E-ATMX-13-raw-cel-1556149855
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.652e-73276At5g62920836412ARR6 (RESPONSE REGULATOR 6)Encodes a Type-A response regulator that is responsive to cytokinin treatment. Its C-ter domain is very short in comparison to other Arabidopsis ARRs (17 total). Arr6 protein is stabilized by cytokinin.C.G.S.X.
0.389e-2097At1g19050838487ARR7 (RESPONSE REGULATOR 7)Encodes a member of the Arabidopsis response regulator (ARR) family, most closely related to ARR15. A two-component response regulator protein containing a phosphate accepting domain in the receiver domain but lacking a DNA binding domain in the output domain. Involved in response to cytokinin and meristem stem cell maintenance. Arr7 protein is stabilized by cytokinin.C.G.S.X.
0.278e-1787At1g74890843828ARR15 (RESPONSE REGULATOR 15)Encodes a nuclear response regulator that acts as a negative regulator in cytokinin-mediated signal transduction. Transcript accumulates in leaves and roots in response to cytokinin treatment.C.G.S.X.
0.223e-1375At1g10470837587ARR4 (RESPONSE REGULATOR 4)Encodes a two-component response regulator. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.C.G.S.X.
0.242e-1169At3g57040824871ARR9 (RESPONSE REGULATOR 9)response regulator ARR9, A two-component response regulator-like protein with a receiver domain with a conserved aspartate residue and a possible phosphorylation site and at the N-terminal half. Appears to interact with histidine kinase like genes ATHP3 and ATHP2C.G.S.X.
0.195e-961At1g59940842288ARR3 (RESPONSE REGULATOR 3)Type A response regulator highly similar to bacterial two-component response regulators. Rapidly induced by cytokinin. Involved in red-light signaling. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.C.G.S.X.
0.132e-550At2g41310818730ATRR3 (RESPONSE REGULATOR 3)Encodes an A- type response Regulator that is primarily expressed in the root and is involved in cytokinin-mediated signalling.C.G.S.X.
0.067e-238At3g56380824805ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17)response regulator 17C.G.S.X.
0.047e-238At2g40670818662ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)response regulator 16C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.132e-1273Glycine maxGma.8046.1.S1_atCA782990--2e-12At3g48100ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5)C.G.S.X.
0.106e-754Hordeum vulgareContig5953_atContig5953--2e-10At1g10470ARR4 (RESPONSE REGULATOR 4)C.G.S.X.
0.096e-446Oryza sativaOs11g0143300AK058585.1--5e-7At3g57040ARR9 (RESPONSE REGULATOR 9)C.G.S.X.
0.298e-24111Populus trichocarpaPtpAffx.18550.1.S1_atCV242865type-a response regulator-2e-23At3g48100ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5)C.G.S.X.
0.103e-446Triticum aestivumTa.10408.1.S1_atCN009026--2e-10At1g10470ARR4 (RESPONSE REGULATOR 4)C.G.S.X.
0.143e-1787Vitis vinifera1608140_atCF211124hypothetical protein LOC100258759-2e-16At3g48100ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5)C.G.S.X.
0.081e-446Zea maysZm.325.1.A1_atAB042268.1response regulator 6-2e-7At3g57040ARR9 (RESPONSE REGULATOR 9)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0007623Any biological process in an organism that recurs with a regularity of approximately 24 hours.
XGO:0010114A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
XGO:0009736A series of molecular signals induced by the detection of cytokinin.
XGO:0009735A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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