Gene omics information

Query gene ID At3g48020
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g48020823957-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PS.X.H.G.
0.4152.4At4g23450828444zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:chloroplast;PMOFVS.X.H.G.
0.3846.7At2g21180816653unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.3846.7At4g11360826738RHA1BEncodes a putative RING-H2 finger protein RHA1b.S.X.H.G.
0.3541.6At5g64880836611unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.3439.8At3g13720820581PRA8F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;POMFS.X.H.G.
0.3235.7At1g53580841793GLY3 (GLYOXALASE II 3)F:hydrolase activity, hydroxyacylglutathione hydrolase activity;P:response to salt stress, methylglyoxal catabolic process to D-lactate;C:unknown;BOMAFPS.X.H.G.
0.3235.7At1g62040842499ATG8C (autophagy 8c)F:microtubule binding;P:autophagy;C:unknown;MOPFVS.X.H.G.
0.3235.7At2g45170819125AtATG8eInvolved in autophagy. Under nutrient starvation the protein localizes to autophagosomes.S.X.H.G.
0.3235.7At3g03870821099unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
142.899.9GSM268245dor-drought-1, biological rep 1GSE10643Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
80.599.9E-MEXP-1112-raw-cel-1590665325
65.099.8GSM142904WW002_ATH1_A1-willa-CON-REP2GSE6181Assembly of the cell wall pectic matrix.
61.899.8GSM173447oxt6 mutant, biological rep3GSE7211A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
50.899.8E-MEXP-1112-raw-cel-1590665429
47.099.8GSM173446oxt6 mutant, biological rep2GSE7211A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
43.099.8GSM142902WW001_ATH1_A1-WILLA-CONGSE6181Assembly of the cell wall pectic matrix.
37.799.7GSM173443wild-type Arabidopsis, biological rep2GSE7211A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
34.999.7E-MEXP-1112-raw-cel-1590665273
34.499.7GSM173442wild-type Arabidopsis, biological rep1GSE7211A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.202e-1685At5g62860836407F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.041e-240At5g11590831031TINY2 (TINY2)encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.C.G.S.X.
0.045e-238At5g38500833838DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;OMPFBC.G.S.X.
0.012e-136At3g53380824506lectin protein kinase family proteinF:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAC.G.S.X.
0.042e-136At3g090322745876unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.038e-134At5g23100832374unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.028e-134At4g02290828080AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFC.G.S.X.
0.048e-134At4g39560830110kelch repeat-containing F-box family proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MPBOVFAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.083e-756Glycine maxGma.15930.1.S1_atCD406615--3e-7At3g48020-C.G.S.X.
0.044e-134Hordeum vulgareContig11437_s_atContig11437--7e-2At3g06780glycine-rich proteinC.G.S.X.
0.061e-448Oryza sativaOs02g0743200AK108304.1-Hypothetical protein7e-3At3g48020-C.G.S.X.
0.041e+034Populus trichocarpaPtpAffx.201072.1.S1_atpmrna2118hypothetical protein-1e-4At1g12830unknown proteinC.G.S.X.
0.062e-136Triticum aestivumTaAffx.30532.1.S1_atCA624419--2e-2At2g30200[acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferaseC.G.S.X.
0.054e+030Vitis vinifera1614179_atCF609304hypothetical protein LOC100246674-5e-3At3g01430-C.G.S.X.
0.041e+032Zea maysZm.2812.1.S1_atAW067476--3e+0At3g48020-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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