CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g48010

Gene name ATCNGC16

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At3g48010 823956 ATCNGC16 member of Cyclic nucleotide gated channel family S.X. H.G.
0.80 89.8 At5g57200 835826 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:N-terminal protein myristoylation, clathrin coat assembly;C:clathrin coat;MOFVPBA S.X. H.G.
0.80 89.8 At5g60070 836129 ankyrin repeat family protein F:protein binding;P:unknown;C:unknown;MOFBPVA S.X. H.G.
0.57 73.8 At2g29040 817452 exostosin family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;OMPFBV S.X. H.G.
0.57 73.8 At5g62310 836352 IRE (INCOMPLETE ROOT HAIR ELONGATION) Encodes a protein with a serine/threonine kinase domain. There are two other closely related members in Arabidopsis. Knock-out mutation results in incomplete root hair elongation. Expression is found all organs examined but is especially strong in elongating root hairs. S.X. H.G.
0.44 57.2 At3g47660 823920 Ran GTPase binding / chromatin binding / zinc ion binding F:chromatin binding, zinc ion binding, Ran GTPase binding;P:unknown;C:unknown;MOBPFAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
255.6 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
249.9 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
235.6 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
235.4 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
230.1 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
228.6 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
225.1 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
216.1 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
199.5 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
189.9 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.08 1e-12 75 At5g14870 831339 CNGC18 (CYCLIC NUCLEOTIDE-GATED CHANNEL 18) Encodes a member of the cyclic nucleotide gated channel family that is asymmetrically localized to the plasma membrane at the growing tip of the pollen tube and is involved in pollen tube growth. It likely directly transduces a cNMP signal into an ion flux that can produce a localized signal capable of regulating the pollen tip-growth machinery. C.G. S.X.
0.14 2e-8 61 At2g24610 816997 ATCNGC14 member of Cyclic nucleotide gated channel family C.G. S.X.
0.05 2e-8 61 At2g28260 817372 ATCNGC15 member of Cyclic nucleotide gated channel family C.G. S.X.
0.04 3e-7 57 At5g53130 835393 CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1) member of Cyclic nucleotide gated channel family C.G. S.X.
0.05 3e-4 48 At2g23980 816931 ATCNGC6 member of Cyclic nucleotide gated channel family C.G. S.X.
0.09 1e-3 46 At4g30360 829159 ATCNGC17 member of Cyclic nucleotide gated channel family C.G. S.X.
0.04 2e-2 42 At1g01340 838832 ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10) member of Cyclic nucleotide gated channel family C.G. S.X.
0.03 7e-2 40 At4g30560 829179 ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9) member of Cyclic nucleotide gated channel family C.G. S.X.
0.02 7e-2 40 At2g46450 819253 ATCNGC12 Member of Cyclic nucleotide gated channel family.Positive regulator of resistance against avirulent fungal pathogen.Suppresses the phenotype conferred by cpr22 in a dosage-dependent manner. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 4e-4 48 Glycine max Gma.7365.1.S1_at CD412721 - - 6e-39 At4g30360 ATCNGC17 C.G. S.X.
0.05 9e-6 52 Hordeum vulgare Contig14060_at Contig14060 - - 3e-3 At4g30360 ATCNGC17 C.G. S.X.
0.07 2e-6 56 Oryza sativa Os02g0255000 AK112041.1 - Cyclic nucleotide-gated ion channel 1 (AtCNGC1)(Cyclic nucleotide-and calmodulin-regulated ion channel1) 2e-6 At3g48010 ATCNGC16 C.G. S.X.
0.18 3e-11 71 Populus trichocarpa PtpAffx.225344.1.S1_at pmrna44630 hypothetical protein - 3e-16 At5g14870 CNGC18 (CYCLIC NUCLEOTIDE-GATED CHANNEL 18) C.G. S.X.
0.02 3e-1 38 Triticum aestivum Ta.30419.2.S1_at CA731951 - - 1e+0 At2g41260 M17 C.G. S.X.
0.04 1e-3 44 Vitis vinifera 1613268_at CB342482 hypothetical protein LOC100260148 - 2e-3 At3g48010 ATCNGC16 C.G. S.X.
0.01 7e+0 32 Zea mays ZmAffx.1202.1.A1_at BE128848 - - 5e-2 At4g27350 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006811 The directed movement of charged atoms or small charged molecules into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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