Gene omics information

Query gene ID At3g48010
Gene name ATCNGC16
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At3g48010823956ATCNGC16member of Cyclic nucleotide gated channel familyS.X.H.G.
0.8089.8At5g57200835826epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedF:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:N-terminal protein myristoylation, clathrin coat assembly;C:clathrin coat;MOFVPBAS.X.H.G.
0.8089.8At5g60070836129ankyrin repeat family proteinF:protein binding;P:unknown;C:unknown;MOFBPVAS.X.H.G.
0.5773.8At2g29040817452exostosin family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;OMPFBVS.X.H.G.
0.5773.8At5g62310836352IRE (INCOMPLETE ROOT HAIR ELONGATION)Encodes a protein with a serine/threonine kinase domain. There are two other closely related members in Arabidopsis. Knock-out mutation results in incomplete root hair elongation. Expression is found all organs examined but is especially strong in elongating root hairs.S.X.H.G.
0.4457.2At3g47660823920Ran GTPase binding / chromatin binding / zinc ion bindingF:chromatin binding, zinc ion binding, Ran GTPase binding;P:unknown;C:unknown;MOBPFAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
255.6100.0GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
249.9100.0GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
235.6100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
235.4100.0GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
230.1100.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
228.6100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
225.1100.0GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
216.1100.0GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
199.5100.0GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
189.9100.0GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.081e-1275At5g14870831339CNGC18 (CYCLIC NUCLEOTIDE-GATED CHANNEL 18)Encodes a member of the cyclic nucleotide gated channel family that is asymmetrically localized to the plasma membrane at the growing tip of the pollen tube and is involved in pollen tube growth. It likely directly transduces a cNMP signal into an ion flux that can produce a localized signal capable of regulating the pollen tip-growth machinery.C.G.S.X.
0.142e-861At2g24610816997ATCNGC14member of Cyclic nucleotide gated channel familyC.G.S.X.
0.052e-861At2g28260817372ATCNGC15member of Cyclic nucleotide gated channel familyC.G.S.X.
0.043e-757At5g53130835393CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1)member of Cyclic nucleotide gated channel familyC.G.S.X.
0.053e-448At2g23980816931ATCNGC6member of Cyclic nucleotide gated channel familyC.G.S.X.
0.091e-346At4g30360829159ATCNGC17member of Cyclic nucleotide gated channel familyC.G.S.X.
0.042e-242At1g01340838832ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10)member of Cyclic nucleotide gated channel familyC.G.S.X.
0.037e-240At4g30560829179ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9)member of Cyclic nucleotide gated channel familyC.G.S.X.
0.027e-240At2g46450819253ATCNGC12Member of Cyclic nucleotide gated channel family.Positive regulator of resistance against avirulent fungal pathogen.Suppresses the phenotype conferred by cpr22 in a dosage-dependent manner.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.064e-448Glycine maxGma.7365.1.S1_atCD412721--6e-39At4g30360ATCNGC17C.G.S.X.
0.059e-652Hordeum vulgareContig14060_atContig14060--3e-3At4g30360ATCNGC17C.G.S.X.
0.072e-656Oryza sativaOs02g0255000AK112041.1-Cyclic nucleotide-gated ion channel 1 (AtCNGC1)(Cyclic nucleotide-and calmodulin-regulated ion channel1)2e-6At3g48010ATCNGC16C.G.S.X.
0.183e-1171Populus trichocarpaPtpAffx.225344.1.S1_atpmrna44630hypothetical protein-3e-16At5g14870CNGC18 (CYCLIC NUCLEOTIDE-GATED CHANNEL 18)C.G.S.X.
0.023e-138Triticum aestivumTa.30419.2.S1_atCA731951--1e+0At2g41260M17C.G.S.X.
0.041e-344Vitis vinifera1613268_atCB342482hypothetical protein LOC100260148-2e-3At3g48010ATCNGC16C.G.S.X.
0.017e+032Zea maysZmAffx.1202.1.A1_atBE128848--5e-2At4g27350unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006811The directed movement of charged atoms or small charged molecules into, out of, within or between cells.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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