CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g48000

Gene name ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At3g48000 823955 ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4) Encodes a putative (NAD+) aldehyde dehydrogenase. S.X. H.G.
0.33 38.1 At3g27820 822402 MDAR4 (MONODEHYDROASCORBATE REDUCTASE 4) Encodes a peroxisome membrane-bound monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2 S.X. H.G.
0.30 32.1 At4g22260 828321 IM (IMMUTANS) Similar to mitochondrial alternative oxidase. im mutants have a variegated phenotype and fail to differentiate chloroplasts in the majority of their cells under high light intensity continuous illumination. The white tissues of immutans accumulate phytoene, a non-colored C40 carotenoid intermediate. This suggests that immutans controls, either directly or indirectly, the activity of phytoene desaturase (PDS), the enzyme that converts phytoene to zeta-carotene in higher plants. However, im is not the structural gene for PDS. It is located in the lumenar face of the thylakoid membrane. IM is expressed ubiquitously in plant tissues. S.X. H.G.
0.29 30.3 At5g53350 835416 CLPX CLP protease regulatory subunit CLPX mRNA, nuclear gene S.X. H.G.
0.27 26.2 At3g03890 821082 FMN binding F:FMN binding;P:unknown;C:chloroplast;BOPM S.X. H.G.
0.23 19.3 At5g44000 834423 glutathione S-transferase C-terminal domain-containing protein F:glutathione transferase activity;P:unknown;C:chloroplast;BOFPMA S.X. H.G.
0.19 12.7 At4g02340 828063 epoxide hydrolase, putative F:epoxide hydrolase activity, catalytic activity;P:unknown;C:peroxisome;BOMFPAV S.X. H.G.
0.18 11.4 At4g29010 829022 AIM1 (ABNORMAL INFLORESCENCE MERISTEM) Functions in beta-oxidation of fatty acids, similar to CuMFP with L-3-hydroxyacyl-CoA hydrolyase , L-3-hydroxyacyl-dehydrogenase, D-3-hydroxyacyl-CoA epimerase, and 3, 2-enoyl-CoA isomerase activities S.X. H.G.
0.15 7.8 At3g12800 820462 SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:peroxisome, plasma membrane;BOMFPAV S.X. H.G.
0.07 1.9 At1g21640 838766 NADK2 Encodes a protein with NAD kinase activity. The protein was also shown to bind calmodulin. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.1 99.5 E-MEXP-849-raw-cel-1181980998
17.9 99.5 GSM269821 WT leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
13.8 99.4 GSM270866 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
12.2 99.3 GSM205156 protoplast_controlDNA_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
11.9 99.3 GSM205159 protoplast_KIN10_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
11.1 99.2 GSM269819 C2 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
11.0 99.2 E-MEXP-849-raw-cel-1181980990
10.4 99.2 E-ATMX-35-raw-cel-1574334896
10.4 99.2 GSM269827 C2 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
10.3 99.2 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.31 9e-13 75 At1g23800 838991 ALDH2B7 Encodes a mitochondrial aldehyde dehydrogenase; nuclear gene for mitochondrial product. C.G. S.X.
0.03 1e-2 42 At3g24503 822042 ALDH2C4 Arabidopsis thaliana aldehyde dehydrogenase AtALDH1a mRNA. a sinapaldehyde dehydrogenase catalyzes both the oxidation of coniferylaldehyde and sinapaldehyde forming ferulic acid and sinapic acid, respectively C.G. S.X.
0.02 5e-2 40 At4g34090 829555 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PO C.G. S.X.
0.01 2e-1 38 At5g66960 836830 prolyl oligopeptidase family protein F:serine-type peptidase activity, serine-type endopeptidase activity;P:proteolysis;C:membrane;OBMPFAV C.G. S.X.
0.01 8e-1 36 At5g42940 834306 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBA C.G. S.X.
0.01 8e-1 36 At4g31790 829307 diphthine synthase, putative (DPH5) F:methyltransferase activity, diphthine synthase activity;P:peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process;C:cellular_component unknown;AOMFBP C.G. S.X.
0.01 3e+0 34 At5g41360 834138 XPB2 Encodes XPB2, a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 1e-49 198 Glycine max Gma.8131.2.S1_at BQ297889 - - 4e-50 At3g48000 ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4) C.G. S.X.
0.24 1e-38 161 Hordeum vulgare Contig3520_at Contig3520 - - 1e-21 At1g23800 ALDH2B7 C.G. S.X.
0.22 1e-19 99 Oryza sativa Os06g0270900 AF162665.1 - RF2 (EC 1.2.1.3) (T cytoplasm male sterilityrestorer factor 2) 1e-53 At1g23800 ALDH2B7 C.G. S.X.
0.29 2e-33 145 Populus trichocarpa PtpAffx.137981.1.S1_at CF119982 hypothetical protein - 7e-34 At3g48000 ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4) C.G. S.X.
0.16 8e-29 129 Triticum aestivum Ta.662.1.S1_x_at CK162267 - - 4e-22 At1g23800 ALDH2B7 C.G. S.X.
0.24 6e-45 180 Vitis vinifera 1608207_at CB343787 hypothetical protein LOC100262043 - 1e-44 At3g48000 ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4) C.G. S.X.
0.29 3e-32 139 Zea mays Zm.16467.1.A1_at AF269064.1 restorer of fertility2 - 1e-49 At1g23800 ALDH2B7 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0046686 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00120 Phosphoenolpyruvate and Pyruvate metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00010 Glycolysis / Gluconeogenesis
00053 Ascorbate and aldarate metabolism
00071 Fatty acid metabolism
00280 Valine, leucine and isoleucine degradation
00310 Lysine degradation
00330 Arginine and proline metabolism
00340 Histidine metabolism
00380 Tryptophan metabolism
00410 beta-Alanine metabolism
00561 Glycerolipid metabolism
00620 Pyruvate metabolism
00640 Propanoate metabolism
00650 Butanoate metabolism
00903 Limonene and pinene degradation
01100 Metabolic pathways
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