Gene omics information

Query gene ID At3g48000
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At3g48000823955ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4)Encodes a putative (NAD+) aldehyde dehydrogenase.S.X.H.G.
0.3338.1At3g27820822402MDAR4 (MONODEHYDROASCORBATE REDUCTASE 4)Encodes a peroxisome membrane-bound monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2S.X.H.G.
0.3032.1At4g22260828321IM (IMMUTANS)Similar to mitochondrial alternative oxidase. im mutants have a variegated phenotype and fail to differentiate chloroplasts in the majority of their cells under high light intensity continuous illumination. The white tissues of immutans accumulate phytoene, a non-colored C40 carotenoid intermediate. This suggests that immutans controls, either directly or indirectly, the activity of phytoene desaturase (PDS), the enzyme that converts phytoene to zeta-carotene in higher plants. However, im is not the structural gene for PDS. It is located in the lumenar face of the thylakoid membrane. IM is expressed ubiquitously in plant tissues.S.X.H.G.
0.2930.3At5g53350835416CLPXCLP protease regulatory subunit CLPX mRNA, nuclear geneS.X.H.G.
0.2726.2At3g03890821082FMN bindingF:FMN binding;P:unknown;C:chloroplast;BOPMS.X.H.G.
0.2319.3At5g44000834423glutathione S-transferase C-terminal domain-containing proteinF:glutathione transferase activity;P:unknown;C:chloroplast;BOFPMAS.X.H.G.
0.1912.7At4g02340828063epoxide hydrolase, putativeF:epoxide hydrolase activity, catalytic activity;P:unknown;C:peroxisome;BOMFPAVS.X.H.G.
0.1811.4At4g29010829022AIM1 (ABNORMAL INFLORESCENCE MERISTEM)Functions in beta-oxidation of fatty acids, similar to CuMFP with L-3-hydroxyacyl-CoA hydrolyase , L-3-hydroxyacyl-dehydrogenase, D-3-hydroxyacyl-CoA epimerase, and 3, 2-enoyl-CoA isomerase activitiesS.X.H.G.
0.157.8At3g12800820462SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:peroxisome, plasma membrane;BOMFPAVS.X.H.G.
0.071.9At1g21640838766NADK2Encodes a protein with NAD kinase activity. The protein was also shown to bind calmodulin.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
17.999.5GSM269821WT leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
13.899.4GSM270866Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1GSE10719Response of Arabidopsis cell culture to phytoprostane A1
12.299.3GSM205156protoplast_controlDNA_rep1GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
11.999.3GSM205159protoplast_KIN10_rep1GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
11.199.2GSM269819C2 leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
10.499.2GSM269827C2 leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
10.399.2GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.319e-1375At1g23800838991ALDH2B7Encodes a mitochondrial aldehyde dehydrogenase; nuclear gene for mitochondrial product.C.G.S.X.
0.031e-242At3g24503822042ALDH2C4Arabidopsis thaliana aldehyde dehydrogenase AtALDH1a mRNA. a sinapaldehyde dehydrogenase catalyzes both the oxidation of coniferylaldehyde and sinapaldehyde forming ferulic acid and sinapic acid, respectivelyC.G.S.X.
0.025e-240At4g34090829555unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;POC.G.S.X.
0.012e-138At5g66960836830prolyl oligopeptidase family proteinF:serine-type peptidase activity, serine-type endopeptidase activity;P:proteolysis;C:membrane;OBMPFAVC.G.S.X.
0.018e-136At5g42940834306zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBAC.G.S.X.
0.018e-136At4g31790829307diphthine synthase, putative (DPH5)F:methyltransferase activity, diphthine synthase activity;P:peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process;C:cellular_component unknown;AOMFBPC.G.S.X.
0.013e+034At5g41360834138XPB2Encodes XPB2, a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies.C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.411e-49198Glycine maxGma.8131.2.S1_atBQ297889--4e-50At3g48000ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4)C.G.S.X.
0.241e-38161Hordeum vulgareContig3520_atContig3520--1e-21At1g23800ALDH2B7C.G.S.X.
0.221e-1999Oryza sativaOs06g0270900AF162665.1-RF2 (EC (T cytoplasm male sterilityrestorer factor 2)1e-53At1g23800ALDH2B7C.G.S.X.
0.292e-33145Populus trichocarpaPtpAffx.137981.1.S1_atCF119982hypothetical protein-7e-34At3g48000ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4)C.G.S.X.
0.168e-29129Triticum aestivumTa.662.1.S1_x_atCK162267--4e-22At1g23800ALDH2B7C.G.S.X.
0.246e-45180Vitis vinifera1608207_atCB343787hypothetical protein LOC100262043-1e-44At3g48000ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4)C.G.S.X.
0.293e-32139Zea maysZm.16467.1.A1_atAF269064.1restorer of fertility2-1e-49At1g23800ALDH2B7C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0046686A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00120Link to KaPPA-View 4Phosphoenolpyruvate and Pyruvate metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00010Link to KEGG PATHWAYGlycolysis / Gluconeogenesis
00053Link to KEGG PATHWAYAscorbate and aldarate metabolism
00071Link to KEGG PATHWAYFatty acid metabolism
00280Link to KEGG PATHWAYValine, leucine and isoleucine degradation
00310Link to KEGG PATHWAYLysine degradation
00330Link to KEGG PATHWAYArginine and proline metabolism
00340Link to KEGG PATHWAYHistidine metabolism
00380Link to KEGG PATHWAYTryptophan metabolism
00410Link to KEGG PATHWAYbeta-Alanine metabolism
00561Link to KEGG PATHWAYGlycerolipid metabolism
00620Link to KEGG PATHWAYPyruvate metabolism
00640Link to KEGG PATHWAYPropanoate metabolism
00650Link to KEGG PATHWAYButanoate metabolism
00903Link to KEGG PATHWAYLimonene and pinene degradation
01100Link to KEGG PATHWAYMetabolic pathways
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