Gene omics information

Query gene ID At3g47480
Gene name calcium-binding EF hand family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3032.1At3g47480823902calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOBS.X.H.G.
0.4050.8At1g215253766777-pseudogene of unknown proteinS.X.H.G.
0.2217.5At4g23150828414protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.2115.8At2g43570818959chitinase, putativeF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMVS.X.H.G.
0.2115.8At3g18250821353unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMFOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
111.699.9GSM142844MG001_ATH1_A25-Torres-8N1GSE6176Impact of Type III effectors on plant defense responses
105.999.9E-MEXP-509-raw-cel-829148666
94.899.9GSM269496mkk1/mkk2, no-treatment, rep-CGSE10646BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
68.599.9GSM142847MG001_ATH1_A28-Torres-9N1GSE6176Impact of Type III effectors on plant defense responses
55.199.8GSM142837MG001_ATH1_A16-Torres-6N1GSE6176Impact of Type III effectors on plant defense responses
54.899.8GSM128660Underwood_1-13_Cor-5x10e7-10h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
50.099.8GSM269495mkk1/mkk2, no-treatment, rep-BGSE10646BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
44.599.8E-MEXP-807-raw-cel-1173273032
44.399.8GSM269499mkk1/mkk2, 24h after BTH, rep-CGSE10646BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
43.699.8GSM142846MG001_ATH1_A27-Torres-9N1GSE6176Impact of Type III effectors on plant defense responses
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.032e-240At5g23160832380unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMC.G.S.X.
0.037e-238At4g21190827867emb1417 (embryo defective 1417)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;POMBC.G.S.X.
0.047e-238At2g41950818795unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, plant-type cell wall;BPC.G.S.X.
0.013e-136At5g19420832062Ran GTPase binding / chromatin binding / zinc ion bindingF:chromatin binding, zinc ion binding, Ran GTPase binding;P:unknown;C:unknown;MOPBFAVC.G.S.X.
0.013e-136At5g50160835081FRO8 (FERRIC REDUCTION OXIDASE 8)Encodes a ferric chelate reductase that is expressed in shoots and flowers.C.G.S.X.
0.053e-136At3g29000822540calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MOFPBVC.G.S.X.
0.033e-136At3g25520822138ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)Encodes ribosomal protein L5 that binds to 5S ribosomal RNA and in involved in its export from the nucleus to the cytoplasm. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.C.G.S.X.
0.011e+034At5g49900835053catalytic/ glucosylceramidaseF:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:integral to membrane, membrane;BPMOAC.G.S.X.
0.021e+034At5g60550836176GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2)Encodes a geminivirus Rep interacting kinase (GRIK; GRIK1/AT3G45240, GRIK2/AT5G60550). GRIKs are SnRK1 (SNF1-related kinases) activating kinases. Both GRIKs specifically bind to the SnRK1 catalytic subunit and phosphorylate the equivalent threonine residue in its activation loop in vitro.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.066e-342Glycine maxGmaAffx.83022.1.S1_atBQ786484--3e-65At1g04820TUA4C.G.S.X.
0.042e+032Hordeum vulgareEBro02_SQ006_G13_x_atEBro02_SQ006_G13--2e+0At2g34925CLE42 (CLAVATA3/ESR-RELATED 42)C.G.S.X.
0.032e+034Oryza sativaOs05g0194500CF321377-No apical meristem (NAM) protein domain containingprotein1e+0At3g47480calcium-binding EF hand family proteinC.G.S.X.
0.072e-240Populus trichocarpaPtpAffx.207860.1.S1_atpmrna15606hypothetical protein-1e-6At5g39670calcium-binding EF hand family proteinC.G.S.X.
0.043e-136Triticum aestivumTaAffx.29199.1.S1_atCA648250--3e-1At3g47480calcium-binding EF hand family proteinC.G.S.X.
0.052e-238Vitis vinifera1618075_atCA811189hypothetical protein LOC100249271-1e+0At5g40500unknown proteinC.G.S.X.
0.035e-134Zea maysZm.5404.1.S1_atCF06411640S ribosomal protein S15a-1e-7At2g19720rps15ab (ribosomal protein S15A B)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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