CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g47380

Gene name invertase/pectin methylesterase inhibitor family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.36 43.6 At3g47380 823892 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.57 73.8 At2g43620 818964 chitinase, putative F:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVM S.X. H.G.
0.50 65.3 At2g17740 816283 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PO S.X. H.G.
0.50 65.3 At4g23210 828420 protein kinase family protein Encodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid. S.X. H.G.
0.44 57.2 At4g22470 828342 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVA S.X. H.G.
0.40 50.8 At1g49000 841322 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
302.2 100.0 GSM142851 MG001_ATH1_A4-Torres-2N1 GSE6176 Impact of Type III effectors on plant defense responses
258.9 100.0 GSM142853 MG001_ATH1_A6-Torres-2N6 GSE6176 Impact of Type III effectors on plant defense responses
244.0 100.0 GSM142852 MG001_ATH1_A5-Torres-2N3 GSE6176 Impact of Type III effectors on plant defense responses
189.9 100.0 GSM131141 AtGen_B-27_2-6-4_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
186.1 100.0 GSM131113 AtGen_B-41_3-6-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
177.4 100.0 GSM131127 AtGen_B-13_1-6-4_REP1_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
165.6 100.0 GSM142833 MG001_ATH1_A10-Torres-5N1 GSE6176 Impact of Type III effectors on plant defense responses
142.9 99.9 GSM142835 MG001_ATH1_A13-Torres-4N1 GSE6176 Impact of Type III effectors on plant defense responses
113.9 99.9 GSM131111 AtGen_B-39_3-4-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
95.1 99.9 GSM131139 AtGen_B-25_2-4-4_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.42 3e-23 109 At5g62350 836356 invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22) F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:response to salt stress;C:endomembrane system;P C.G. S.X.
0.04 2e-2 40 At5g62330 836354 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.13 7e-2 38 At5g62340 836355 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.03 7e-2 38 At2g36130 818186 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:cellular_component unknown;OBMFPA C.G. S.X.
0.02 3e-1 36 At4g18160 827541 KCO6 Encodes AtTPK3 (KCO6), a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins.AtTPK3 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo. C.G. S.X.
0.01 1e+0 34 At5g39710 833967 EMB2745 (EMBRYO DEFECTIVE 2745) F:unknown;P:embryonic development ending in seed dormancy;C:unknown;POMFBA C.G. S.X.
0.02 1e+0 34 At4g11350 826737 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PFMO C.G. S.X.
0.01 1e+0 34 At3g23120 821887 AtRLP38 (Receptor Like Protein 38) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-1 36 Glycine max Gma.4444.3.S1_at CD412673 - - 3e-18 At4g18040 EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) C.G. S.X.
0.03 2e+0 32 Hordeum vulgare EBro08_SQ003_B08_at EBro08_SQ003_B08 - - 4e+0 Atmg00860 - C.G. S.X.
Os02g0228225 0.05 6e-1 Oryza sativa Os08g0342000 9636.m02487 - - 6e-1 At5g62770 unknown protein C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.18340.1.S1_at CV263209 histone H3 - 8e-39 At5g10400 histone H3 C.G. S.X.
0.04 5e+0 32 Triticum aestivum TaAffx.24964.1.S1_at CA709128 - - 3e+0 At3g17100 transcription factor C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1615480_at BQ799376 hypothetical protein LOC100247007 - 2e-6 At4g26210 mitochondrial ATP synthase g subunit family protein C.G. S.X.
0.04 2e+0 32 Zea mays Zm.6049.3.A1_a_at AI734480 phosphatidylinositol transporter/ transporter - 3e-3 At1g76640 calmodulin-related protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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