CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g47210

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.19 12.7 At3g47210 823874 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane;PM S.X. H.G.
0.44 57.2 At1g31050 839991 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus;P S.X. H.G.
0.44 57.2 At5g24410 832512 glucosamine/galactosamine-6-phosphate isomerase-related F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP S.X. H.G.
0.27 26.2 At4g24180 828519 - F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV S.X. H.G.
0.17 10.2 At2g29750 817525 UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1) F:quercetin 3'-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
118.4 99.9 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
85.4 99.9 GSM184918 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
81.8 99.9 GSM184523 Stele root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
80.5 99.9 GSM184520 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
75.0 99.9 GSM184504 Pericycle root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
64.3 99.8 GSM184517 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
62.7 99.8 GSM260883 Yap_A2-AMF_Rep2 GSE10323 Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
62.4 99.8 GSM184530 Stele root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
61.7 99.8 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
61.0 99.8 GSM184507 Pericycle root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.53 5e-85 315 At3g47250 823878 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.51 2e-56 220 At3g47200 823873 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane;P C.G. S.X.
0.07 1e-5 52 At3g44700 823596 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.09 2e-4 48 At5g22540 832315 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 4e-2 40 At5g22550 832317 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max HgAffx.14614.1.A1_at CK351198 - - 3e+0 At4g01340 CHP-rich zinc finger protein-related C.G. S.X.
0.02 1e+0 34 Hordeum vulgare EBan01_SQ004_H17_at EBan01_SQ004_H17 - - 6e-2 At3g51040 RTH (RTE1-HOMOLOG) C.G. S.X.
0.03 9e-2 40 Oryza sativa OsAffx.31970.1.S1_at - - - 0 C.G. S.X.
0.03 3e-1 38 Populus trichocarpa PtpAffx.205313.1.S1_at pmrna10528 hypothetical protein - 2e+0 At3g27831 - C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.65279.1.A1_at BJ252901 - - 1e+0 At1g20900 ESC (ESCAROLA) C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1619675_at CB970205 - - 5e-18 At5g16715 EMB2247 (embryo defective 2247) C.G. S.X.
0.02 3e-1 36 Zea mays Zm.13931.1.S1_x_at Z35302.1 - - 8e-1 At1g09630 ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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