CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g47130

Gene name F-box family protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.25 22.6 At3g47130 823866 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.55 70.6 At4g16040 827288 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.27 26.2 At4g26330 828739 UNE17 (UNFERTILIZED EMBRYO SAC 17) F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, double fertilization forming a zygote and endosperm;C:peroxisome, cytoplasm;BPOFAM S.X. H.G.
0.18 11.4 At4g29450 829066 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.12 4.9 At1g04090 839298 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFBMO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
353.3 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
305.7 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
289.1 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
270.8 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
237.7 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
226.6 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
218.2 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
218.1 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
217.8 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
195.4 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.36 1e-81 303 At3g47140 823867 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.50 8e-68 258 At3g47150 823868 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.03 2e-6 54 At1g24120 839024 ARL1 (ARG1-LIKE 1) encodes a DnaJ-like protein similar to ARG1 and ARL2 that are both involved in root and hypocotyl gravitropism response. However, null mutation in this gene does not result in defects in gravitropism. Gene is expressed in all tissues examined. C.G. S.X.
0.02 6e-4 46 At3g52320 824397 F-box family protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO C.G. S.X.
0.03 6e-4 46 At2g02890 814820 F-box family protein F:drug transporter activity, antiporter activity;P:multidrug transport;C:membrane;P C.G. S.X.
0.03 6e-4 46 At1g32660 840160 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 6e-4 46 At1g02040 839284 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MOPFVBA C.G. S.X.
0.02 2e-3 44 At3g24080 821994 KRR1 family protein F:molecular_function unknown;P:response to salt stress;C:cytosol;MOFBPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-3 44 Glycine max HgAffx.19394.1.S1_at CA939786 - - 2e-1 At5g28630 glycine-rich protein C.G. S.X.
0.03 2e-5 50 Hordeum vulgare EBro01_SQ001_M06_at EBro01_SQ001_M06 - - 8e-1 At5g20885 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 4e-3 44 Oryza sativa OsAffx.3616.1.S1_at - - - 0 C.G. S.X.
0.04 8e-7 56 Populus trichocarpa PtpAffx.202698.1.S1_at pmrna5391 hypothetical protein - 6e-2 At5g40730 AGP24 C.G. S.X.
0.04 4e-2 40 Triticum aestivum TaAffx.51251.1.S1_at CA728679 - - 2e+0 At4g21500 unknown protein C.G. S.X.
0.03 1e-2 40 Vitis vinifera 1609773_at CB978867 hypothetical protein LOC100261732 - 1e+0 At3g11600 unknown protein C.G. S.X.
0.03 2e-1 36 Zea mays Zm.17554.1.S1_at CK371625 - - 1e-3 At3g13430 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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