CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g47040

Gene name glycosyl hydrolase family 3 protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At3g47040 823857 glycosyl hydrolase family 3 protein F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cellular_component unknown;BOFPAM S.X. H.G.
0.83 91.4 At5g11920 831065 AtcwINV6 (6-&1-fructan exohydrolase) Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity. S.X. H.G.
0.73 85.5 At1g24320 839048 alpha-glucosidase, putative F:mannosyl-oligosaccharide glucosidase activity, alpha-glucosidase activity, catalytic activity;P:oligosaccharide metabolic process;C:cellular_component unknown;MFOBPA S.X. H.G.
0.73 85.5 At3g46500 823803 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, iron ion binding;P:biological_process unknown;C:cellular_component unknown;POBFM S.X. H.G.
0.59 74.7 At3g11390 820311 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBV S.X. H.G.
0.55 70.6 At3g13090 820497 ATMRP8 member of MRP subfamily S.X. H.G.
0.53 68.6 At5g09290 830788 3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative F:3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity;P:sulfur metabolic process;C:unknown;BOMFPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
137.5 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
103.0 99.9 GSM184533 Protoplasted root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
96.6 99.9 GSM184520 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
96.4 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
95.3 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
90.6 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
81.3 99.9 GSM184539 Whole roots 2hr KCl control treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
77.8 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
75.7 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
71.1 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.81 0 1025 At3g47010 823854 hydrolase, hydrolyzing O-glycosyl compounds F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cellular_component unknown;BOFPAM C.G. S.X.
0.80 0 948 At3g47000 823853 glycosyl hydrolase family 3 protein F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cellular_component unknown;BOFPAM C.G. S.X.
0.77 0 783 At3g47050 823858 glycosyl hydrolase family 3 protein F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:vacuole;BOFPAM C.G. S.X.
0.04 3e-4 48 At5g20950 832220 glycosyl hydrolase family 3 protein F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cell wall, membrane, plant-type cell wall;BOFPAM C.G. S.X.
0.01 6e-2 40 At5g50520 835120 nodulin family protein F:unknown;P:unknown;C:endomembrane system;BOPFMA C.G. S.X.
0.01 6e-2 40 At5g50630 835132 nodulin family protein F:unknown;P:unknown;C:endomembrane system;BOPFMA C.G. S.X.
0.03 6e-2 40 At5g04885 830368 glycosyl hydrolase family 3 protein F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:plasma membrane, anchored to membrane;BOFPAM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 9e-5 50 Glycine max GmaAffx.57563.1.S1_at AW733781 - - 7e-8 At5g04885 glycosyl hydrolase family 3 protein C.G. S.X.
0.07 2e-19 97 Hordeum vulgare Contig4970_at Contig4970 - - 1e-9 At5g20950 glycosyl hydrolase family 3 protein C.G. S.X.
0.06 3e-5 52 Oryza sativa Os02g0131400 9630.m00291 - Beta-D-glucan exohydrolase, isoenzyme ExoII (EC3.2.1.58) 4e-3 At5g20950 glycosyl hydrolase family 3 protein C.G. S.X.
0.16 1e-13 79 Populus trichocarpa PtpAffx.204922.1.S1_at pmrna9736 hypothetical protein - 4e-12 At3g47000 glycosyl hydrolase family 3 protein C.G. S.X.
0.07 1e+0 36 Triticum aestivum TaAffx.113276.1.S1_at CA616668 - - 1e-21 At5g04885 glycosyl hydrolase family 3 protein C.G. S.X.
0.02 2e-2 40 Vitis vinifera 1607374_at CF404162 hypothetical protein LOC100246224 - 1e-13 At5g20950 glycosyl hydrolase family 3 protein C.G. S.X.
0.04 5e-22 105 Zea mays Zm.6303.1.S1_at AF064707.1 - - 8e-27 At5g20950 glycosyl hydrolase family 3 protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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