Gene omics information

Query gene ID At3g47000
Gene name glycosyl hydrolase family 3 protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5773.8At3g47000823853glycosyl hydrolase family 3 proteinF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cellular_component unknown;BOFPAMS.X.H.G.
0.6781.6At1g22620838868ATSAC1 (suppressor of actin 1)SAC domain phosphoinositide (3,5)P2 phosphatase. Colocalized with a Golgi Marker. Required for normal cell morphogenesis, cell wall synthesis, and actin organization.S.X.H.G.
0.4761.2At3g54860824651vacuolar protein sorting protein, putativeHomologous to yeast VPS33. Forms a complex with VCL1 and AtVPS11. Involved in vacuolar biogenesis.S.X.H.G.
0.4457.2At1g48790841301mov34 family proteinF:molecular_function unknown;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFPOS.X.H.G.
0.3846.7At5g05700830454ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1)Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence.S.X.H.G.
0.3643.6At5g06260830513nucleolar protein-relatedF:calcium ion binding;P:N-terminal protein myristoylation;C:cellular_component unknown;MOPFS.X.H.G.
0.3338.1At3g19420821476ATPEN2 (ARABIDOPSIS THALIANA PTEN 2)F:phosphatase activity, protein tyrosine phosphatase activity;P:dephosphorylation;C:unknown;OMFBPVS.X.H.G.
0.2930.3At3g03380821268DegP7 (DegP protease 7)Encodes a putative DegP protease.S.X.H.G.
0.2014.4At1g70570843394anthranilate phosphoribosyltransferase, putativeF:anthranilate phosphoribosyltransferase activity, transferase activity, transferring glycosyl groups;P:tryptophan biosynthetic process, metabolic process;C:chloroplast;BOAPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
12.999.3GSM133957Fukuda_1-2_0B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
8.599.0GSM284396Arabidopsis GPSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
8.299.0GSM133892Schroeder_1-6_JS43-control-96h_Rep1_ATH1GSE5744Response to potassium starvation in roots
8.098.9GSM142591DB001_ATH1_A1-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cells
7.498.8E-ATMX-35-raw-cel-1574334928
7.298.8GSM266668Arabidopsis, root cells, columella root cap, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
7.098.7GSM184516Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
7.098.7GSM7717704h low CO2 + dark replicate AGSE3423Carbon fixation (endogenous sugar) and light-dependent gene expression
6.998.7GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
6.898.7GSM142596DB001_ATH1_A6-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cells
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.800948At3g47040823857glycosyl hydrolase family 3 proteinF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cellular_component unknown;BOFPAMC.G.S.X.
0.800716At3g47010823854hydrolase, hydrolyzing O-glycosyl compoundsF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cellular_component unknown;BOFPAMC.G.S.X.
0.722e-159563At3g47050823858glycosyl hydrolase family 3 proteinF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:vacuole;BOFPAMC.G.S.X.
0.026e-550At3g62710825445glycosyl hydrolase family 3 proteinF:xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:endomembrane system;BOFPAMC.G.S.X.
0.064e-344At5g20950832220glycosyl hydrolase family 3 proteinF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cell wall, membrane, plant-type cell wall;BOFPAMC.G.S.X.
0.026e-240At5g20940832219glycosyl hydrolase family 3 proteinF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:endomembrane system;BOFPAMC.G.S.X.
0.036e-240At5g04885830368glycosyl hydrolase family 3 proteinF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:plasma membrane, anchored to membrane;BOFPAMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.049e-550Glycine maxGmaAffx.57563.1.S1_atAW733781--7e-8At5g04885glycosyl hydrolase family 3 proteinC.G.S.X.
0.062e-963Hordeum vulgareContig4970_atContig4970--1e-9At5g20950glycosyl hydrolase family 3 proteinC.G.S.X.
0.082e-1585Oryza sativaOs05g0449600AK063607.1-Exoglucanase precursor6e-1At4g35820oxidoreductase, 2OG-Fe(II) oxygenase family proteinC.G.S.X.
0.246e-1273Populus trichocarpaPtpAffx.204922.1.S1_atpmrna9736hypothetical protein-4e-12At3g47000glycosyl hydrolase family 3 proteinC.G.S.X.
0.071e-346Triticum aestivumTaAffx.7177.1.S1_x_atCA694274--5e-4At3g47000glycosyl hydrolase family 3 proteinC.G.S.X.
0.021e+034Vitis vinifera1611747_atCF608890hypothetical protein LOC100246224-3e-8At5g20950glycosyl hydrolase family 3 proteinC.G.S.X.
0.042e-344Zea maysZm.1588.1.S1_atAY344632.1beta-glucanase-5e-9At3g47050glycosyl hydrolase family 3 proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0005975The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00412Link to KaPPA-View 4Glycoside Hydrolase



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00460Link to KEGG PATHWAYCyanoamino acid metabolism
00500Link to KEGG PATHWAYStarch and sucrose metabolism
00940Link to KEGG PATHWAYPhenylpropanoid biosynthesis
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