CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g46900

Gene name COPT2

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.31 33.8 At3g46900 823843 COPT2 encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast S.X. H.G.
0.40 50.8 At1g74760 - - - S.X. H.G.
0.40 50.8 At3g58810 825050 MTPA2 (METAL TOLERANCE PROTEIN A2) Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane. S.X. H.G.
0.16 8.8 At5g04950 830377 NAS1 (NICOTIANAMINE SYNTHASE 1) Encodes a nicotianamide synthase. S.X. H.G.
0.04 0.9 At2g46750 819288 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
121.0 99.9 GSM265432 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
87.9 99.9 GSM157324 Hammond_3-17_Potassium-starved-root_Rep3_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
83.4 99.9 GSM265433 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
80.5 99.9 GSM265474 Arabidopsis, whole roots, -Fe, 72 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
77.0 99.9 GSM157327 Hammond_3-11_Potassium-starved-root_Rep2_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
69.1 99.9 GSM265471 Arabidopsis, whole roots, -Fe, 48 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
67.0 99.8 GSM265473 Arabidopsis, whole roots, -Fe, 72 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
47.6 99.8 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
44.8 99.8 GSM265472 Arabidopsis, whole roots, -Fe, 48 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
38.9 99.8 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.70 1e-49 196 At2g26975 817239 copper transporter, putative F:copper ion transmembrane transporter activity;P:copper ion transport;C:vacuole;MPFO C.G. S.X.
0.32 6e-36 151 At5g59030 836020 COPT1 (copper transporter 1) encodes a putative copper transport protein that contains copper-binding motif and functionally complements in copper-transport defective yeast strains C.G. S.X.
0.12 6e-8 57 At5g59040 836021 COPT3 encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast C.G. S.X.
0.03 2e-5 50 At3g11330 820306 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:unknown;MPBOFAV C.G. S.X.
0.02 1e-3 44 At5g37420 833718 AGL105 F:transcription factor activity;P:biological_process unknown;C:cellular_component unknown;OMFBPVA C.G. S.X.
0.03 1e-3 44 At3g27290 822348 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF C.G. S.X.
0.03 1e-3 44 At1g05310 837030 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;MPOBFVA C.G. S.X.
0.04 1e-3 44 At1g47960 841214 C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1) Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling. C.G. S.X.
0.02 4e-3 42 At5g37430 833719 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 8e-2 38 Glycine max GmaAffx.68286.1.A1_at BG839255 - - 2e-1 At4g30670 unknown protein C.G. S.X.
0.04 7e-3 40 Hordeum vulgare Contig3622_at Contig3622 - - 2e-2 At3g46900 COPT2 C.G. S.X.
0.06 5e-10 65 Oryza sativa Os05g0424700 AK107848.1 - Ctr copper transporter family protein 2e-12 At5g59030 COPT1 (copper transporter 1) C.G. S.X.
0.10 9e-8 57 Populus trichocarpa PtpAffx.33993.1.A1_a_at DN492265 copper transporter - 1e-7 At3g46900 COPT2 C.G. S.X.
0.05 1e-2 40 Triticum aestivum TaAffx.115179.1.S1_at CA485544 - - 3e+0 At5g13330 Rap2.6L (related to AP2 6L) C.G. S.X.
0.12 8e-17 85 Vitis vinifera 1615407_at CA818445 hypothetical protein LOC100249436 - 5e-25 At5g59030 COPT1 (copper transporter 1) C.G. S.X.
0.05 6e-3 40 Zea mays ZmAffx.32.1.S1_at AI657422 - - 3e+0 At1g12020 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0015678 The directed, high-affinity movement of copper (Cu) ions into, out of, within or between cells. In high affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations.
C GO:0006825 The directed movement of copper (Cu) ions into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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