CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g46810

Gene name DC1 domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g46810 823834 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO S.X. H.G.
0.41 52.4 At4g11490 826754 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.38 46.7 At2g23945 816927 chloroplast nucleoid DNA-binding protein-related F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMOF S.X. H.G.
0.36 43.6 At2g39320 818517 OTU-like cysteine protease family protein F:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.35 41.6 At2g47280 819341 pectinesterase F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFAM S.X. H.G.
0.34 39.8 At1g17240 838295 AtRLP2 (Receptor Like Protein 2) F:protein binding, protein kinase activity;P:signal transduction;C:unknown;PMOBFAV S.X. H.G.
0.34 39.8 At1g22290 838836 14-3-3 protein GF14, putative (GRF10) F:protein phosphorylated amino acid binding;P:unknown;C:unknown;MPOF S.X. H.G.
0.34 39.8 At3g45390 823677 lectin protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBF S.X. H.G.
0.34 39.8 At3g06280 819802 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.33 38.1 At2g27650 817311 ubiquitin carboxyl-terminal hydrolase-related F:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;POMF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
612.8 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
292.6 100.0 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
267.9 100.0 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
204.2 100.0 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
178.0 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
172.9 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
157.5 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
155.8 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
127.1 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
118.2 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.36 4e-80 299 At3g46800 823833 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOF C.G. S.X.
0.21 2e-70 268 At2g04680 815011 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOF C.G. S.X.
0.19 2e-70 268 At2g19650 816484 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:unknown;POM C.G. S.X.
0.30 2e-51 204 At2g19660 816485 DC1 domain-containing protein F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO C.G. S.X.
0.23 4e-37 157 At5g37620 833740 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
0.04 5e-9 63 At5g22355 832296 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOF C.G. S.X.
0.04 3e-7 57 At4g02180 827483 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO C.G. S.X.
0.01 1e-6 56 At3g43890 823505 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOF C.G. S.X.
0.07 4e-6 54 At3g48400 823998 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 36 Glycine max Gma.1518.1.S1_at BI945317 - - 9e-37 At3g10300 calcium-binding EF hand family protein C.G. S.X.
0.01 5e-1 36 Hordeum vulgare Contig11808_at Contig11808 - - 7e-10 At4g16430 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.02 1e-1 40 Oryza sativa OsAffx.31813.1.S1_x_at - - - 0 C.G. S.X.
0.01 1e+0 36 Populus trichocarpa PtpAffx.67207.1.S1_at CK318571 - - 5e-1 At5g28780 unknown protein C.G. S.X.
0.02 2e-2 42 Triticum aestivum TaAffx.64676.1.S1_at BJ281614 - - 1e+0 At3g04620 nucleic acid binding C.G. S.X.
0.02 8e-2 38 Vitis vinifera 1621755_at CF209304 - - 4e-1 At5g07225 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 2e+0 34 Zea mays Zm.11769.1.A1_at BM380605 hypothetical protein LOC100275246 - 1e+0 At5g42520 ATBPC6 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0007242 A series of reactions within the cell that occur as a result of a single trigger reaction or compound.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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