CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g46770

Gene name transcriptional factor B3 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.52 67.4 At3g46770 823830 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P S.X. H.G.
0.85 92.4 At3g20520 821598 SVL3 (SHV3-LIKE 3) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOM S.X. H.G.
0.81 90.4 At4g21630 828250 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM S.X. H.G.
0.80 89.8 At5g60140 836136 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BOMFPVA S.X. H.G.
0.76 87.4 At3g58780 825047 SHP1 (SHATTERPROOF 1) One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells. S.X. H.G.
0.74 86.1 At4g17480 827459 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO S.X. H.G.
0.70 83.5 At4g12960 826908 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF S.X. H.G.
0.65 79.6 At3g49270 824088 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO S.X. H.G.
0.59 74.7 At4g32170 829349 CYP96A2 member of CYP96A S.X. H.G.
0.56 73.0 At4g09960 826586 STK (SEEDSTICK) a MADS box transcription factor expressed in the carpel and ovules S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
174.5 100.0 GSM10442 WT Ovule 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
173.0 100.0 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
122.6 99.9 GSM10441 WT Ovule 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
120.6 99.9 GSM284398 Arabidopsis GGSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
117.8 99.9 GSM311285 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
105.7 99.9 GSM311283 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
100.3 99.9 GSM10477 lec1-1 24-Hr Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
96.6 99.9 GSM284397 Arabidopsis GGSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
94.3 99.9 GSM10445 WT 24-Hr Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
93.6 99.9 GSM10446 WT 24-Hr Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-2 40 At3g01015 821318 - F:unknown;P:unknown;C:unknown;PMOF C.G. S.X.
0.01 1e-1 38 At2g40070 818595 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOBPVA C.G. S.X.
0.03 4e-1 36 At5g60142 6241172 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;OMPFBV C.G. S.X.
0.01 4e-1 36 At3g59730 825142 receptor lectin kinase, putative F:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.03 4e-1 36 At1g34000 840297 OHP2 (ONE-HELIX PROTEIN 2) Encodes a novel member of the Lhc family from Arabidopsis with one predicted transmembrane alpha-helix closely related to helix I of Lhc protein from PSI (Lhca4). Gene expression is triggered by light stress and both transcript and protein accumulate in a light intensity-dependent manner. Ohp2 is associated with PSI under low- or high-light conditions. C.G. S.X.
0.01 2e+0 34 At4g11400 826744 ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein / Myb-like DNA-binding domain-containing protein F:DNA binding;P:unknown;C:vacuole;PMF C.G. S.X.
0.01 2e+0 34 At2g32040 817764 integral membrane transporter family protein The At2g32040 gene product has been demonstrated to mediate folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin. The gene is expressed in both chloroplast and non-green plastids. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max GmaAffx.73514.1.S1_at BM094142 - - 8e-1 At4g13790 auxin-responsive protein, putative C.G. S.X.
0.03 1e+1 30 Hordeum vulgare HVSMEm0018N09r2_at HVSMEm0018N09r2 - - 4e+0 At4g28840 unknown protein C.G. S.X.
0.01 5e-2 40 Oryza sativa Os03g0242100 9631.m01320 - Checkpoint protein Rad24 family protein 2e-1 At5g66130 ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) C.G. S.X.
0.03 9e+0 32 Populus trichocarpa PtpAffx.80036.1.S1_at DN503472 hypothetical protein - 5e-11 At3g24140 FMA (FAMA) C.G. S.X.
0.03 7e+0 32 Triticum aestivum TaAffx.3720.10.S1_at CA737550 - - 2e+0 At3g46770 transcriptional factor B3 family protein C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1620669_at CF510888 - - 1e+0 At3g46770 transcriptional factor B3 family protein C.G. S.X.
0.03 2e-1 36 Zea mays Zm.6941.1.A1_at CF638044 - - 4e-1 At3g46770 transcriptional factor B3 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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