Gene omics information

Query gene ID At3g46770
Gene name transcriptional factor B3 family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5267.4At3g46770823830transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PS.X.H.G.
0.8592.4At3g20520821598SVL3 (SHV3-LIKE 3)F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOMS.X.H.G.
0.8190.4At4g21630828250subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAMS.X.H.G.
0.8089.8At5g60140836136transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BOMFPVAS.X.H.G.
0.7687.4At3g58780825047SHP1 (SHATTERPROOF 1)One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells.S.X.H.G.
0.7486.1At4g17480827459palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOS.X.H.G.
0.7083.5At4g12960826908gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFS.X.H.G.
0.6579.6At3g49270824088unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOS.X.H.G.
0.5974.7At4g32170829349CYP96A2member of CYP96AS.X.H.G.
0.5673.0At4g09960826586STK (SEEDSTICK)a MADS box transcription factor expressed in the carpel and ovulesS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
174.5100.0GSM10442WT Ovule 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
173.0100.0GSM311284Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
122.699.9GSM10441WT Ovule 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
120.699.9GSM284398Arabidopsis GGSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
117.899.9GSM311285Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
105.799.9GSM311283Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
100.399.9GSM10477lec1-1 24-Hr Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
96.699.9GSM284397Arabidopsis GGSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
94.399.9GSM10445WT 24-Hr Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
93.699.9GSM10446WT 24-Hr Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.023e-240At3g01015821318-F:unknown;P:unknown;C:unknown;PMOFC.G.S.X.
0.011e-138At2g40070818595-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOBPVAC.G.S.X.
0.034e-136At5g601426241172DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;OMPFBVC.G.S.X.
0.014e-136At3g59730825142receptor lectin kinase, putativeF:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.034e-136At1g34000840297OHP2 (ONE-HELIX PROTEIN 2)Encodes a novel member of the Lhc family from Arabidopsis with one predicted transmembrane alpha-helix closely related to helix I of Lhc protein from PSI (Lhca4). Gene expression is triggered by light stress and both transcript and protein accumulate in a light intensity-dependent manner. Ohp2 is associated with PSI under low- or high-light conditions.C.G.S.X.
0.012e+034At4g11400826744ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein / Myb-like DNA-binding domain-containing proteinF:DNA binding;P:unknown;C:vacuole;PMFC.G.S.X.
0.012e+034At2g32040817764integral membrane transporter family proteinThe At2g32040 gene product has been demonstrated to mediate folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin. The gene is expressed in both chloroplast and non-green plastids.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034Glycine maxGmaAffx.73514.1.S1_atBM094142--8e-1At4g13790auxin-responsive protein, putativeC.G.S.X.
0.031e+130Hordeum vulgareHVSMEm0018N09r2_atHVSMEm0018N09r2--4e+0At4g28840unknown proteinC.G.S.X.
0.015e-240Oryza sativaOs03g02421009631.m01320-Checkpoint protein Rad24 family protein2e-1At5g66130ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)C.G.S.X.
0.039e+032Populus trichocarpaPtpAffx.80036.1.S1_atDN503472hypothetical protein-5e-11At3g24140FMA (FAMA)C.G.S.X.
0.037e+032Triticum aestivumTaAffx.3720.10.S1_atCA737550--2e+0At3g46770transcriptional factor B3 family proteinC.G.S.X.
0.035e-134Vitis vinifera1620669_atCF510888--1e+0At3g46770transcriptional factor B3 family proteinC.G.S.X.
0.032e-136Zea maysZm.6941.1.A1_atCF638044--4e-1At3g46770transcriptional factor B3 family proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage