CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g46530

Gene name RPP13 (RECOGNITION OF PERONOSPORA PARASITICA 13)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.73 85.5 At3g46530 823806 RPP13 (RECOGNITION OF PERONOSPORA PARASITICA 13) Confers resistance to the biotrophic oomycete, Peronospora parasitica. Encodes an NBS-LRR type R protein with a putative amino-terminal leucine zipper. Fungal protein ATR13 induces RPP13 gene expression and disease resistance. S.X. H.G.
0.67 81.6 At3g44630 823589 disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation, defense response;C:intrinsic to membrane;PMBOFAV S.X. H.G.
0.60 75.7 At4g19510 827692 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMOBFA S.X. H.G.
0.50 65.3 At1g69550 843291 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBOMF S.X. H.G.
0.33 38.1 At1g58807 842225 disease resistance protein (CC-NBS-LRR class), putative / PRM1 homolog, putative F:protein binding, ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBOFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
42.3 99.8 E-MEXP-509-raw-cel-829148703
30.0 99.7 E-MEXP-509-raw-cel-829148808
23.1 99.6 E-MEXP-509-raw-cel-829148666
22.7 99.6 E-MEXP-509-raw-cel-829148842
19.0 99.5 E-MEXP-509-raw-cel-829148420
18.4 99.5 GSM131391 AtGen_6-7211_UV-Bstress-Shoots-1.0h_Rep1 GSE5626 AtGenExpress: Stress Treatments (UV-B stress)
16.9 99.5 E-MEXP-509-raw-cel-829148877
16.2 99.5 E-MEXP-509-raw-cel-829148525
15.9 99.5 E-MEXP-509-raw-cel-829148165
15.9 99.5 E-MEXP-509-raw-cel-829148385
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.64 0 1011 At3g46730 823826 disease resistance protein (CC-NBS class), putative F:ATP binding;P:defense response, apoptosis;C:endomembrane system;PMBOFA C.G. S.X.
0.53 2e-79 297 At3g46710 823824 disease resistance protein (CC-NBS-LRR class), putative F:ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBOFVA C.G. S.X.
0.01 3e-1 38 At2g28660 817415 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:chloroplast;OPMBF C.G. S.X.
0.01 1e+0 36 At5g53800 835461 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
0.01 1e+0 36 At5g37860 833764 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;POBFM C.G. S.X.
0.01 1e+0 36 At5g47250 834772 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:mitochondrion;PMBOFA C.G. S.X.
0.01 1e+0 36 At4g13300 826960 TPS13 (TERPENOID SYNTHASE 13) Catalyzes the conversion of farnesyl diphosphate to (Z)-gamma-bisabolene and the additional minor products E-nerolidol and alpha-bisabolol. Expressed in cortex and sub-epidermal layers of roots, leaf hydathodes and flower stigmata. Induced by wounding. C.G. S.X.
0.01 1e+0 36 At1g73400 843675 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMAB C.G. S.X.
0.01 5e+0 34 At5g23800 832445 agenet domain-containing protein F:RNA binding;P:unknown;C:cellular_component unknown;POBM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e-1 38 Glycine max GmaAffx.36836.1.S1_at BI969127 hypothetical protein LOC547474 - 3e+0 At4g17718 - C.G. S.X.
0.01 6e-1 36 Hordeum vulgare Contig14469_at Contig14469 - - 6e-7 At3g21250 ATMRP6 C.G. S.X.
0.01 2e-1 40 Oryza sativa Os10g0568600 9638.m03827 - Disease resistance protein family protein 4e+0 At5g42957 unknown protein C.G. S.X.
0.01 2e+0 36 Populus trichocarpa PtpAffx.213411.1.S1_at pmrna26234 hypothetical protein - 1e-18 At3g52490 heat shock protein-related C.G. S.X.
0.02 3e-1 38 Triticum aestivum TaAffx.78951.1.S1_at CA723870 - - 9e-1 At5g16760 inositol 1,3,4-trisphosphate 5/6-kinase C.G. S.X.
0.02 9e-2 38 Vitis vinifera 1617892_at CD714637 - - 3e-1 At4g12860 UNE14 (unfertilized embryo sac 14) C.G. S.X.
0.01 2e+0 34 Zea mays Zm.17677.1.S1_at CK369609 - - 4e-1 At1g77220 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009626 The rapid, localized death of plant cells in response to invasion by a pathogen.
X GO:0009814 A response of a plant to a pathogenic agent that prevents the occurrence or spread of disease.
S GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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