CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g46370

Gene name leucine-rich repeat protein kinase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.65 79.6 At3g46370 823783 leucine-rich repeat protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA S.X. H.G.
0.19 12.7 At3g42540 823263 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.15 7.8 At1g41930 3767211 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.14 6.8 At3g30200 822713 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.13 5.8 At5g28700 3770831 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.13 5.8 At1g24370 839054 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.08 2.3 At3g42360 3769446 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.07 1.9 At3g28590 822489 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.07 1.9 At5g16640 831526 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA S.X. H.G.
0.06 1.4 At4g03570 825657 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
395.0 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
339.8 100.0 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
324.5 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
302.1 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
288.6 100.0 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
269.2 100.0 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
251.7 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
243.2 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
119.3 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
83.3 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.72 0 960 At3g46400 823790 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.40 5e-157 555 At3g46350 823781 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.43 6e-135 482 At3g46340 823779 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.39 2e-128 460 At3g46420 823792 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.26 5e-71 270 At3g46330 823778 MEE39 (maternal effect embryo arrest 39) F:kinase activity;P:embryonic development ending in seed dormancy;C:endomembrane system;PMOBFVA C.G. S.X.
0.38 4e-62 240 At3g46410 823791 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:peroxisome;MPOBFVA C.G. S.X.
0.16 3e-41 171 At2g28970 817446 leucine-rich repeat protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.15 5e-37 157 At2g28990 817448 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.24 4e-31 137 At5g59650 836086 leucine-rich repeat protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 40 Glycine max Gma.15867.1.A1_at CD407308 - - 1e-6 At4g21366 ATP binding / protein tyrosine kinase C.G. S.X.
0.01 2e+0 34 Hordeum vulgare HVSMEl0014O24f_x_at HVSMEl0014O24f - - 1e+0 At4g00026 - C.G. S.X.
0.01 4e-2 42 Oryza sativa Os01g0958000 AK103469.1 - Cell division control protein 2 homolog 2 (EC2.7.1.37) (Fragment) 1e-21 At5g64960 CDKC2 (Cyclin dependent kinase group C 2) C.G. S.X.
0.02 4e-4 48 Populus trichocarpa PtpAffx.204985.1.S1_at pmrna9874 hypothetical protein - 6e-52 At5g59700 protein kinase, putative C.G. S.X.
0.02 8e-2 40 Triticum aestivum Ta.3929.2.A1_a_at BJ264899 - - 1e+0 At4g34920 1-phosphatidylinositol phosphodiesterase-related C.G. S.X.
0.02 9e-2 38 Vitis vinifera 1607531_at CA809116 hypothetical protein LOC100251868 - 1e-23 At3g46290 protein kinase, putative C.G. S.X.
0.01 8e-3 42 Zea mays Zm.14413.1.A1_at CF052725 hypothetical protein LOC100279243 - 1e-21 At5g10270 CDKC C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0007169 The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand.
C GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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