CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g46280

Gene name protein kinase-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g46280 823773 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFBO S.X. H.G.
1.00 100.0 At1g51800 841606 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.80 89.8 At4g22470 828342 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVA S.X. H.G.
0.75 86.9 At2g17740 816283 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PO S.X. H.G.
0.64 78.9 At2g39200 818505 MLO12 (MILDEW RESISTANCE LOCUS O 12) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in root tips and cotyledon vascular system, in floral organs (anthers and stigma), and in fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). S.X. H.G.
0.63 78.1 At1g51850 841612 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA S.X. H.G.
0.63 78.1 At2g19190 816436 FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1) Receptor-like protein kinase. Involved in early defense signaling. S.X. H.G.
0.61 76.7 At1g51790 841605 kinase F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
284.5 100.0 E-NASC-76-raw-cel-1359878900
247.0 100.0 E-NASC-76-raw-cel-1359878976
230.4 100.0 E-NASC-76-raw-cel-1359879158
118.0 99.9 E-MEXP-1094-raw-cel-1379507313
105.4 99.9 E-MEXP-807-raw-cel-1173272832
101.4 99.9 GSM128686 Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
93.8 99.9 GSM142853 MG001_ATH1_A6-Torres-2N6 GSE6176 Impact of Type III effectors on plant defense responses
92.7 99.9 E-MEXP-1094-raw-cel-1379507273
91.5 99.9 E-NASC-76-raw-cel-1359879106
79.3 99.9 GSM142834 MG001_ATH1_A12-Torres-5N6 GSE6176 Impact of Type III effectors on plant defense responses
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.69 5e-116 418 At3g46270 823772 receptor protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPBOFVA C.G. S.X.
0.57 3e-74 280 At3g46260 823771 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.06 7e-4 46 At3g46240 823769 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPFVA C.G. S.X.
0.03 7e-4 46 At1g24485 6240649 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOMFAV C.G. S.X.
0.01 2e-1 38 At1g66280 842945 BGLU22 F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:membrane;BOPMFA C.G. S.X.
0.01 7e-1 36 At5g03160 831917 ATP58IPK (ARABIDOPSIS HOMOLOG OF MAMALLIAN P58IPK) J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast. C.G. S.X.
0.01 3e+0 34 Atcg00740 - - RNA polymerase alpha subunit C.G. S.X.
0.02 3e+0 34 At3g57440 824911 unknown protein F:unknown;P:unknown;C:unknown;P C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 38 Glycine max GmaAffx.30041.1.S1_at AW185758 - - 8e-1 At1g72240 unknown protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HT09D15r_s_at HT09D15r - - 3e+0 At5g46730 glycine-rich protein C.G. S.X.
0.02 6e+0 34 Oryza sativa Os05g0568200 9633.m04622 - Typical P-type R2R3 Myb protein (Fragment) 6e-6 At3g01530 AtMYB57 (myb domain protein 57) C.G. S.X.
0.02 4e+0 34 Populus trichocarpa PtpAffx.157025.1.S1_at CK107493 - - 6e-15 At5g18930 BUD2 (BUSHY AND DWARF 2) C.G. S.X.
0.02 3e+0 34 Triticum aestivum Ta.28432.1.S1_at BQ171475 - - 6e+0 At5g20165 unknown protein C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1622819_at BQ798887 hypothetical protein LOC100264319 - 5e-18 At4g00110 GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3) C.G. S.X.
0.02 5e+0 32 Zea mays ZmAffx.146.1.A1_at AI667826 30S ribosomal protein S31 - 2e-1 At4g21450 vesicle-associated membrane family protein / VAMP family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage