Gene omics information

Query gene ID At3g46170
Gene name short-chain dehydrogenase/reductase (SDR) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g46170823760short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:response to cadmium ion;C:cellular_component unknown;BOMFPAVS.X.H.G.
0.8089.8At3g45570823699zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVS.X.H.G.
0.7888.6At4g19770827721glycosyl hydrolase family 18 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;MBFOVPAS.X.H.G.
0.7788.0At1g61950842490CPK19member of Calcium Dependent Protein KinaseS.X.H.G.
0.7687.4At1g57906842163-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7687.4At3g19070821441cell wall protein-relatedF:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVAS.X.H.G.
0.7687.4At3g223403768898transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.7586.9At1g33820840277unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBPS.X.H.G.
0.7586.9At1g18310838411glycosyl hydrolase family 81 proteinF:hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity;P:cell wall macromolecule catabolic process;C:unknown;FOBPMS.X.H.G.
0.7486.1At4g20510827799transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
492.4100.0GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
392.1100.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
370.0100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
357.3100.0GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
327.8100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
285.3100.0GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
285.0100.0GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
237.0100.0GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
220.0100.0GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
206.5100.0GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.9101096At3g55290824695short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:peroxisome;BOMFPAVC.G.S.X.
0.9101063At3g55310824697binding / catalytic/ oxidoreductaseF:oxidoreductase activity, binding, catalytic activity;P:fatty acid elongation, unsaturated fatty acid, metabolic process, fatty acid elongation, saturated fatty acid;C:membrane;BOMFPAVC.G.S.X.
0.830636At1g63380842644binding / catalytic/ oxidoreductaseF:oxidoreductase activity, binding, catalytic activity;P:metabolic process, non-phosphorylated glucose catabolic process;C:cellular_component unknown;BOMFPAVC.G.S.X.
0.822e-179628At1g62610842558short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVC.G.S.X.
0.742e-120432At2g17845816294short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034Glycine maxGmaAffx.63405.1.S1_atBQ453737--4e-21At2g40190glycosyl transferase family 1 proteinC.G.S.X.
0.023e+032Hordeum vulgareContig21132_atContig21132--1e+0At1g04778unknown proteinC.G.S.X.
0.043e+034Oryza sativaOs08g0510400AK069393.1-Short-chain dehydrogenase/reductase SDR familyprotein8e-3At1g62610short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.101e-552Populus trichocarpaPtpAffx.36016.1.S1_atCV246616hypothetical protein-4e-8At3g55310binding / catalytic/ oxidoreductaseC.G.S.X.
0.032e+034Triticum aestivumTa.14944.1.S1_atCA685324--7e-1At4g08875-C.G.S.X.
0.022e+032Vitis vinifera1620138_atBM437825--1e+0At5g05280zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.033e+032Zea maysZm.5621.1.A1_atCK370677hypothetical protein LOC100273111-3e+0At2g33990iqd9 (IQ-domain 9)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0046686A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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