Gene omics information

Query gene ID At3g46110
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At3g46110823754unknown proteinF:unknown;P:unknown;C:plasma membrane;PS.X.H.G.
0.6176.7At1g55450841992embryo-abundant protein-relatedF:methyltransferase activity;P:response to salt stress;C:unknown;BPFMOAS.X.H.G.
0.5974.7At2g41100818709TCH3 (TOUCH 3)encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers.S.X.H.G.
0.5873.8At3g11820820355SYP121 (SYNTAXIN OF PLANTS 121)Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance.S.X.H.G.
0.5570.6At5g35735833550auxin-responsive family proteinF:unknown;P:unknown;C:plasma membrane, membrane;PMFOBS.X.H.G.
0.5469.5At3g09830820141protein kinase, putativeF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAS.X.H.G.
0.5065.3At1g07000837210ATEXO70B2 (exocyst subunit EXO70 family protein B2)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.S.X.H.G.
0.5065.3At4g34150829563C2 domain-containing proteinF:unknown;P:response to cold;C:unknown;MPFOBVAS.X.H.G.
0.5065.3At5g13190831158-F:unknown;P:biological_process unknown;C:cellular_component unknown;PMS.X.H.G.
0.5065.3At5g44070834430CAD1 (CADMIUM SENSITIVE 1)Phytochelatin synthase gene confers tolerance to cadmium ions. Catalyzes phytochelatin (PC) synthesis from glutathione (GSH) in the presence of Cd2+, Zn2+, Cu2+ and Fe3+, but not by Co2+ or Ni2+.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
101.399.9GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
46.899.8GSM142852MG001_ATH1_A5-Torres-2N3GSE6176Impact of Type III effectors on plant defense responses
46.499.8GSM142851MG001_ATH1_A4-Torres-2N1GSE6176Impact of Type III effectors on plant defense responses
41.999.8GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
37.599.7GSM142849MG001_ATH1_A2-Torres-1N3GSE6176Impact of Type III effectors on plant defense responses
37.599.7GSM131322AtGen_6-3422_Saltstress-Roots-6.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
35.999.7GSM142840MG001_ATH1_A1-Torres-1N1GSE6176Impact of Type III effectors on plant defense responses
35.899.7GSM142853MG001_ATH1_A6-Torres-2N6GSE6176Impact of Type III effectors on plant defense responses
34.699.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.362e-28127At5g59790836100unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMVC.G.S.X.
0.025e-446At2g28150817361unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;OMBFPVC.G.S.X.
0.015e-136At5g08440830743unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PMOFBC.G.S.X.
0.025e-136At1g64450842753proline-rich family proteinF:unknown;P:unknown;C:unknown;MBOPFVAC.G.S.X.
0.022e+034At5g65165836640SDH2-3One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion. Transcripts appear during seed maturation, persist through dessication, are abundant in dry seeds, and markedly decline during germination.C.G.S.X.
0.012e+034At5g46760834719basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POMFBVC.G.S.X.
0.022e+034At5g57000835802unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.107e-446Glycine maxGmaAffx.92442.1.S1_atCF808167--2e-8At5g59790unknown proteinC.G.S.X.
0.024e+032Hordeum vulgareHT05O21u_x_atHT05O21u--8e-1At3g55680invertase/pectin methylesterase inhibitor family proteinC.G.S.X.
0.024e+034Oryza sativaOsAffx.2320.1.S1_at---0C.G.S.X.
0.113e-963Populus trichocarpaPtpAffx.200802.1.S1_atpmrna1567hypothetical protein-2e-10At5g59790unknown proteinC.G.S.X.
0.031e-138Triticum aestivumTa.8774.1.S1_a_atBJ242668--7e-2At3g46110unknown proteinC.G.S.X.
0.022e-136Vitis vinifera1615420_atAY427156.1--2e-1At5g57750zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.023e+032Zea maysZm.5732.1.A1_x_atAY108368.1hypothetical protein LOC100272253-1e+0At1g05780unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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