CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g45700

Gene name proton-dependent oligopeptide transport (POT) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.48 62.5 At3g45700 823712 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PMBOF S.X. H.G.
0.65 79.6 At2g39430 818528 disease resistance-responsive protein-related / dirigent protein-related F:molecular_function unknown;P:lignan biosynthetic process;C:endomembrane system;PABFO S.X. H.G.
0.62 77.3 At4g17280 827442 - F:unknown;P:multicellular organismal development;C:membrane;P S.X. H.G.
0.61 76.7 At1g05260 837028 RCI3 (RARE COLD INDUCIBLE GENE 3) Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings. S.X. H.G.
0.61 76.7 At4g20140 827760 GSO1 (GASSHO1) Encodes GASSHO1 (GSO1), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO1 and a homolog GSO2 (At5g44700) are required for the formation of a normal epidermal surface during embryogenesis. S.X. H.G.
0.61 76.7 At5g26310 832700 UGT72E3 UGT72E3 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl alcohol as well as sinapic acid. The enzyme is thought to be involved in lignin- and phenylpropanoid metabolism. A knockdown mutant line (72E3KD) was obtained using RNAi silencing. No reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype, in contrast with the knockdown line constructed for UGT72E2 displayed a twofold reduction in the these phenylpropanoid 4-O-glucosides. S.X. H.G.
0.59 74.7 At2g27370 817280 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.59 74.7 At1g43020 840901 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO S.X. H.G.
0.58 73.8 At1g30750 839955 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPV S.X. H.G.
0.58 73.8 At2g32300 817791 UCC1 (UCLACYANIN 1) Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
185.9 100.0 GSM265430 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
164.1 99.9 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
152.3 99.9 GSM266677 Arabidopsis, root cells, stele, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
145.8 99.9 GSM265416 Arabidopsis, root cells, -Fe, replicate 3 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
140.5 99.9 GSM266675 Arabidopsis, root cells, stele, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
133.6 99.9 GSM265422 Arabidopsis, root, longitudinal zone 3, standard conditions, rep1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
132.5 99.9 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
128.5 99.9 GSM184500 Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
96.8 99.9 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
94.6 99.9 GSM265425 Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.87 0 847 At3g45710 823713 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMOFA C.G. S.X.
0.68 3e-164 579 At3g45680 823710 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport, response to nematode;C:membrane;PBMOF C.G. S.X.
0.68 2e-121 436 At3g45690 823711 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMOF C.G. S.X.
0.68 5e-116 418 At3g45720 823714 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMOFA C.G. S.X.
0.15 1e-27 125 At3g45660 823708 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMOF C.G. S.X.
0.19 7e-23 109 At3g45650 823707 NAXT1 (NITRATE EXCRETION TRANSPORTER1) Encodes a nitrate efflux transporter NAXT1 (for NITRATE EXCRETION TRANSPORTER1). Localized to the plasma membrane. NAXT1 belongs to a subclass of seven NAXT members from the large NITRATE TRANSPORTER1/PEPTIDE TRANSPORTER family and is mainly expressed in the cortex of mature roots. C.G. S.X.
0.04 2e-7 57 At3g45673 6240250 unknown protein F:unknown;P:unknown;C:unknown C.G. S.X.
0.01 8e-1 36 At2g01980 814729 SOS1 (SALT OVERLY SENSITIVE 1) Encodes a plasma membrane-localized Na+/H+ antiporter SOS1. Functions in the extrusion of toxic Na+ from cells and is essential for plant salt tolerance. Has 12 predicted transmembrane domains in the N-terminal region and a long cytoplasmic tail of approx. 700 aa at the C-terminal side. SOS1 interacts through its predicted cytoplasmic tail with RCD1, a regulator of oxidative-stress responses, suggesting that SOS1 might function in oxidative-stress tolerance. C.G. S.X.
0.01 3e+0 34 At5g18230 831941 transcription regulator NOT2/NOT3/NOT5 family protein F:transcription regulator activity;P:negative regulation of transcription, regulation of transcription;C:nucleus;MOFBPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-2 42 Glycine max GmaAffx.61130.1.S1_at CA799668 - - 5e-3 At3g45700 proton-dependent oligopeptide transport (POT) family protein C.G. S.X.
0.02 2e+0 34 Hordeum vulgare Contig26518_at Contig26518 - - 2e+0 At2g46160 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 4e-1 38 Oryza sativa OsAffx.31631.1.S1_at - - - 0 C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.152367.1.S1_at CX185632 hypothetical protein - 1e+0 At1g50640 ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3) C.G. S.X.
0.02 1e+1 32 Triticum aestivum TaAffx.84973.1.S1_at CA626716 - - 9e-1 At1g78470 - C.G. S.X.
0.02 4e-3 42 Vitis vinifera 1609574_at CF212064 hypothetical protein LOC100251235 - 2e-17 At1g19330 unknown protein C.G. S.X.
0.01 1e+0 34 Zea mays Zm.9768.1.A1_at BM338514 hypothetical protein LOC100273687 - 3e-2 At1g29730 ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006857 The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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