Gene omics information

Query gene ID At3g45640
Gene name ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At3g45640823706ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3)Encodes a mitogen-activated kinase whose mRNA levels increase in response to touch, cold, salinity stress and chitin oligomers.Also functions in ovule development. Heterozygous MPK3 mutants in a homozygous MPK6 background are female sterile due to defects in integument development. MPK3 can be dephosphorylated by MKP2 in vitro.S.X.H.G.
0.8391.4At4g39640830118GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1)The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast.S.X.H.G.
0.8089.8At4g34150829563C2 domain-containing proteinF:unknown;P:response to cold;C:unknown;MPFOBVAS.X.H.G.
0.7184.2At3g09830820141protein kinase, putativeF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAS.X.H.G.
0.6781.6At3g52400824405SYP122 (SYNTAXIN OF PLANTS 122)syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathwayS.X.H.G.
0.6378.1At1g55450841992embryo-abundant protein-relatedF:methyltransferase activity;P:response to salt stress;C:unknown;BPFMOAS.X.H.G.
0.5368.6At1g29690839846CAD1 (constitutively activated cell death 1)Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
77.499.9E-MEXP-807-raw-cel-1173273060
77.399.9E-MEXP-807-raw-cel-1173273144
66.399.8E-MEXP-807-raw-cel-1173273223
63.099.8E-MEXP-807-raw-cel-1173273170
60.299.8E-MEXP-807-raw-cel-1173273116
54.699.8E-MEXP-807-raw-cel-1173273088
53.999.8E-MEXP-807-raw-cel-1173273252
39.299.8E-MEXP-807-raw-cel-1173273196
36.899.7GSM39213RRE2_Chitin3GSE2169rre1 and rre2 mutants
32.999.7GSM39197RRE1_Chitin3GSE2169rre1 and rre2 mutants
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.142e-1997At3g59790825148ATMPK10member of MAP KinaseC.G.S.X.
0.232e-1997At2g43790818982ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)Encodes a MAP kinase induced by pathogens, ethylene biosynthesis, oxidative stress and osmotic stress.Also involved in ovule development. Homozygous mutants in a MPK3 heterozygous background are female sterile due to defects in integument development.C.G.S.X.
0.121e-757At4g36450829797ATMPK14 (Mitogen-activated protein kinase 14)member of MAP KinaseC.G.S.X.
0.112e-654At4g11330826735ATMPK5 (MAP KINASE 5)MAP kinaseC.G.S.X.
0.082e-654At2g18170816330ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7)F:MAP kinase activity, kinase activity;P:signal transduction, response to hydrogen peroxide, circadian rhythm;C:unknown;MOPFBVAC.G.S.X.
0.124e-550At4g01370828151ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4)Encodes a nuclear and cytoplasmically localized MAP kinase involved in mediating responses to pathogens. Its substrates include MKS1.C.G.S.X.
0.034e-550At1g07880837303ATMPK13member of MAP KinaseC.G.S.X.
0.036e-446At2g42880818888ATMPK20member of MAP KinaseC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.507e-63242Glycine maxGma.7226.2.S1_a_atBM887472mitogen-activated protein kinase 1-6e-63At3g45640ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3)C.G.S.X.
0.156e-27121Hordeum vulgareContig7661_atContig7661--2e-53At2g43790ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)C.G.S.X.
0.128e-1479Oryza sativaOs06g0154500AK111691.1-Mitogen-activated protein kinase (MAP kinase 6)5e-36At2g43790ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)C.G.S.X.
0.452e-96353Populus trichocarpaPtpAffx.41158.1.S1_s_atDN491953hypothetical protein-3e-96At3g45640ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3)C.G.S.X.
0.107e-22105Triticum aestivumTa.23916.1.S2_s_atAY173962.1Mitogen-activated protein kinase-1e-52At2g43790ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)C.G.S.X.
0.308e-53206Vitis vinifera1606881_atBQ797107hypothetical protein LOC100263976-2e-52At3g45640ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3)C.G.S.X.
0.155e-24111Zea maysZm.218.1.A1_atAB016802.1MAP kinase 5-2e-50At2g43790ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0080136The process that enables cells to respond in a more rapid and robust manner than nonprimed cells to much lower levels of a stimulus indicating the organism is under stress.
XGO:0009617A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium.
XGO:0009611A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
XGO:0048481The process whose specific outcome is the progression of the ovule over time, from its formation to the mature structure. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed.
XGO:0010120The chemical reactions and pathways resulting in the formation of camalexin, an indole phytoalexin.
XGO:0000169Any process that initiates the activity of the inactive enzyme MAP kinase activity during osmolarity sensing.
XGO:0006970A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.
XGO:0006979A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
XGO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
XGO:0010200A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
SGO:0009738A series of molecular signals mediated by the detection of abscisic acid.
SGO:0006950A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
SGO:0007165The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
04650Link to KEGG PATHWAYNatural killer cell mediated cytotoxicity
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