Gene omics information

Query gene ID At3g45260
Gene name zinc finger (C2H2 type) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3032.1At3g45260823664zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFBS.X.H.G.
0.6075.7At5g38990833891protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.5570.6At1g034008387512-oxoglutarate-dependent dioxygenase, putativeA single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC oxidase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques, etiolated seedlings, leaves, stems and flowers.S.X.H.G.
0.5570.6At1g21270838723WAK2cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase.S.X.H.G.
0.5065.3At1g66970843015SVL2 (SHV3-LIKE 2)F:kinase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to plasma membrane, apoplast, chloroplast, anchored to membrane;BPOMS.X.H.G.
0.135.8At5g11060830973KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4)A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root.S.X.H.G.
0.135.8At5g11250830995disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMOBFAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
50.499.8GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
24.299.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
20.599.6GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
19.199.6E-TABM-52-raw-cel-1583683598
17.299.5GSM74909ice1_24H Cold_Rep2GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
16.999.5GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
16.899.5GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.799.5GSM142881GW001_ATH1_A26-Warre-24fGSE6177The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
16.299.5GSM244452Arabidopsis AtMYB30-ox_90-105 min_ Xanthomonas inoculated_biological rep2_exp2GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
15.999.5GSM142880GW001_ATH1_A25-Warre-24fGSE6177The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
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Homologous genes



Paralogous genes



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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.321e-67258At5g60470836168nucleic acid binding / transcription factor/ zinc ion bindingF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFC.G.S.X.
0.245e-45182At3g13810820593AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFBC.G.S.X.
0.291e-42174At1g55110841954AtIDD7 (Arabidopsis thaliana Indeterminate(ID)-Domain 7)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFC.G.S.X.
0.272e-41171At5g03150831919JKD (JACKDAW)JKD is a nuclear-localized putative transcription factor with three zinc finger domains. jkd mutants show a number of root patterning defects including ectopic periclinal divisions in the cortex, increased cell numbers in the cortical and epidermal layers, a disrupted QC marker expression pattern, and disorganized QC and columella cells. jkd mutants also have a reduced number of meristematic cells in their roots. JKD can interact with the SCR and SHR proteins implicated in root patterning, as well as another zinc finger transcription factor, MAGPIE. All of these interactions require the first zinc finger in JKD according to a Y2H assay. There are also transcriptional interactions among these proteins. The initiation of JKD transcription does not appear to depend on SCR and SHR, but later expression in the post-embryonic QC cells and ground tissue initials is reduced in scr and shr mutants. JKD also appears to be required for SCR transcription beginning in the embryo. There is also some evidence that JKD plays a role in promoting the movement of SHR into the nucleus, particularly in QC cells, but this may be indirect.C.G.S.X.
0.271e-33145At1g03840839396MGP (Magpie)MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations.C.G.S.X.
0.184e-33143At3g50700824234AtIDD2 (Arabidopsis thaliana Indeterminate(ID)-Domain 2)zinc finger protein, similar to maize Indeterminate1 (ID1)C.G.S.X.
0.233e-24113At4g02670828206AtIDD12 (Arabidopsis thaliana Indeterminate(ID)-Domain 12)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;MOPFC.G.S.X.
0.148e-1995At2g02070814738AtIDD5 (Arabidopsis thaliana Indeterminate(ID)-Domain 5)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;MOFPBAVC.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.264e-43176Glycine maxGmaAffx.73708.1.S1_atBF598075--3e-43At3g45260zinc finger (C2H2 type) family proteinC.G.S.X.
0.058e-238Hordeum vulgareHS15C17r_atHS15C17r--2e-2At3g45260zinc finger (C2H2 type) family proteinC.G.S.X.
0.163e-1791Oryza sativaOsAffx.24525.1.S1_at---0C.G.S.X.
0.215e-24113Populus trichocarpaPtpAffx.139060.1.S1_atCN522335hypothetical protein-3e-45At1g55110AtIDD7 (Arabidopsis thaliana Indeterminate(ID)-Domain 7)C.G.S.X.
0.055e-550Triticum aestivumTa.27378.1.S1_s_atCA647282--9e-13At1g14580zinc finger (C2H2 type) family proteinC.G.S.X.
0.033e-342Vitis vinifera1608942_atCF403137hypothetical protein LOC100257993-7e-6At5g66730zinc finger (C2H2 type) family proteinC.G.S.X.
0.033e-136Zea maysZm.372.1.S1_atAF058757.1indeterminate growth1-9e-7At1g14580zinc finger (C2H2 type) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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