CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g44950

Gene name glycine-rich protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.31 33.8 At3g44950 823630 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPFVA S.X. H.G.
0.89 94.6 At1g61920 842487 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.86 93.1 At2g16340 816130 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMFOPAV S.X. H.G.
0.67 81.6 At3g50250 824187 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.53 68.6 At3g50540 824218 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
697.5 100.0 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
460.8 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
408.0 100.0 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
406.3 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
366.0 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
273.9 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
270.0 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
184.7 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
160.9 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
159.6 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.29 6e-28 123 At3g43583 2745931 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OPBMFVA C.G. S.X.
0.20 4e-7 54 At2g11005 815567 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBOPFVA C.G. S.X.
0.21 2e-6 52 At4g11870 826794 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBFMAP C.G. S.X.
0.04 1e-4 46 At1g62760 842574 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:unknown;MOFBPVA C.G. S.X.
0.03 7e-3 40 At5g52060 835281 ATBAG1 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 1) A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development. C.G. S.X.
0.02 7e-3 40 At5g38560 833844 protein kinase family protein F:structural constituent of cell wall, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MBOFPVA C.G. S.X.
0.03 7e-3 40 At5g62220 836343 exostosin family protein F:catalytic activity;P:unknown;C:chloroplast, membrane;POM C.G. S.X.
0.02 7e-3 40 At5g63720 836492 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MBOFPV C.G. S.X.
0.04 7e-3 40 At3g11820 820355 SYP121 (SYNTAXIN OF PLANTS 121) Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 9e-3 40 Glycine max Gma.9692.1.A1_at BG362937 - - 1e-3 At5g53590 auxin-responsive family protein C.G. S.X.
0.07 5e-2 36 Hordeum vulgare Contig107_x_at Contig107 - - 1e-15 At2g40205 60S ribosomal protein L41 (RPL41C) C.G. S.X.
0.07 5e-5 48 Oryza sativa Os.55462.1.S1_at - - - 0 C.G. S.X.
0.07 1e-1 36 Populus trichocarpa PtpAffx.201307.1.S1_at pmrna2597 hypothetical protein - 1e+0 At5g23950 C2 domain-containing protein C.G. S.X.
0.06 3e-2 38 Triticum aestivum TaAffx.78753.1.S1_at CA727770 - - 7e-2 At3g44950 glycine-rich protein C.G. S.X.
0.07 8e-3 38 Vitis vinifera 1610654_at BQ793239 hypothetical protein LOC100247382 - 6e-2 At3g44950 glycine-rich protein C.G. S.X.
0.07 3e-3 40 Zea mays ZmAffx.889.1.A1_at AI770841 - - 8e-7 At2g40650 pre-mRNA splicing factor PRP38 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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