CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g44860

Gene name FAMT (farnesoic acid carboxyl-O-methyltransferase)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.23 19.3 At3g44860 823620 FAMT (farnesoic acid carboxyl-O-methyltransferase) Encodes a farnesoic acid carboxyl-O-methyltransferase. S.X. H.G.
0.40 50.8 At1g61610 842457 S-locus lectin protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA S.X. H.G.
0.31 33.8 At2g38240 818403 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:response to salt stress;C:unknown;POBFM S.X. H.G.
0.25 22.6 At1g17420 838314 LOX3 Lipoxygenase S.X. H.G.
0.22 17.5 At5g13220 831162 JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10) Plants overexpressing At5g13220.3, but not At5g13220.1 showed enhanced insensitivity to MeJa. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
60.1 99.8 GSM128720 Pieterse_1-6_avrPstDC3000-24h_Rep1_ATH1 GSE5525 Transcriptome changes of Arabidopsis during pathogen and insect attack
59.7 99.8 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
54.2 99.8 E-MEXP-807-raw-cel-1173273252
52.6 99.8 GSM157375 Truman_1-3_Pst-DC3000(avrRpm1)-4hpi_Rep1_ATH1 GSE6831 Systemic response to avirulent bacterial infection
50.1 99.8 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
47.7 99.8 GSM157361 Ulker_2-4_WRKY-KO-30-Pst-DC3000_Rep1_ATH1 GSE6829 Group II-A WRKY transcription factors and early leaf senescence
46.9 99.8 GSM131120 AtGen_B-6_1-6-1_REP_1_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
42.1 99.8 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
40.6 99.8 E-MEXP-807-raw-cel-1173273116
40.4 99.8 E-MEXP-807-raw-cel-1173273060
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.89 0 1415 At3g44870 823621 S-adenosyl-L-methionine:carboxyl methyltransferase family protein F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF C.G. S.X.
0.79 4e-162 571 At3g44840 823618 S-adenosyl-L-methionine:carboxyl methyltransferase family protein F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF C.G. S.X.
0.04 3e-5 50 At5g37990 833778 S-adenosylmethionine-dependent methyltransferase/ methyltransferase F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF C.G. S.X.
0.02 1e-4 48 At5g38100 833790 methyltransferase-related F:methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF C.G. S.X.
0.08 5e-4 46 At1g66690 842987 S-adenosyl-L-methionine:carboxyl methyltransferase family protein F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF C.G. S.X.
0.12 8e-3 42 At1g66700 842988 PXMT1 A member of the Arabidopsis SABATH methyltransferase gene family. Encodes PXMT1, a methyltransferase that methylates 1,7-paraxanthine. C.G. S.X.
0.06 1e-1 38 At5g37970 833776 S-adenosyl-L-methionine:carboxyl methyltransferase family protein F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:unknown;POBMF C.G. S.X.
0.01 1e-1 38 At1g61370 842431 S-locus lectin protein kinase family protein F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-2 40 Glycine max GmaAffx.47649.1.S1_at CD407147 salicylic acid methyl transferase-like protein - 2e-4 At4g36470 S-adenosyl-L-methionine:carboxyl methyltransferase family protein C.G. S.X.
0.03 1e+0 34 Hordeum vulgare HVSMEa0005L24r2_x_at HVSMEa0005L24r2 - - 5e-1 At3g27590 unknown protein C.G. S.X.
0.01 1e+0 36 Oryza sativa Os.55035.1.S1_at - - - 0 C.G. S.X.
0.07 2e-4 48 Populus trichocarpa PtpAffx.202596.1.S1_s_at pmrna5196 hypothetical protein - 2e-1 At1g66700 PXMT1 C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.120104.1.S1_at BJ244047 - - 1e+0 At5g39300 ATEXPA25 (ARABIDOPSIS THALIANA EXPANSIN A25) C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1617046_at CF512505 hypothetical protein LOC100244517 - 2e-1 At1g68160 unknown protein C.G. S.X.
0.03 4e+0 32 Zea mays Zm.15678.3.A1_x_at BM073330 hypothetical protein LOC100193991 /// hypothetical protein LOC100273150 /// hypothetical protein LOC100277471 - 3e+0 At5g16640 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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