Gene omics information

Query gene ID At3g44460
Gene name DPBF2
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5267.4At3g44460823571DPBF2basic leucine zipper transcription factor (BZIP67), identical to basic leucine zipper transcription factor GI:18656053 from (Arabidopsis thaliana); identical to cDNA basic leucine zipper transcription factor (atbzip67 gene) GI:18656052. Located in the nucleus and expressed during seed maturation in the cotyledons.S.X.H.G.
0.9597.0At1g25410839127ATIPT6AB061404 Arabidopsis thaliana AtIPT6 mRNA for cytokinin synthase, complete cdsS.X.H.G.
0.8693.1At5g51490835223pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOMS.X.H.G.
0.8089.8At1g18100838390E12A11E12A11 protein (E12A11)S.X.H.G.
0.7687.4At1g73290843663scpl5 (serine carboxypeptidase-like 5)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOS.X.H.G.
0.7083.5At2g25940817135ALPHA-VPE (alpha-vacuolar processing enzyme)Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions.S.X.H.G.
0.7083.5At1g65880842900BZO1 (BENZOYLOXYGLUCOSINOLATE 1)Encodes a benzoate-CoA ligase. Involved in the biosynthesis of benzoyloxyglucosinolate in Arabidopsis seeds.S.X.H.G.
0.6781.6At4g25980828704cationic peroxidase, putativeF:peroxidase activity;P:response to oxidative stress;C:endomembrane system;PFOMS.X.H.G.
0.6781.6At5g44360834462FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAMS.X.H.G.
0.5974.7At5g07500830642PEI1Encodes an embryo-specific zinc finger transcription factor required for heart-stage embryo formation.S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
580.1100.0GSM131699ATGE_81_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
516.4100.0GSM131698ATGE_81_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
495.6100.0GSM131697ATGE_81_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
301.7100.0GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
216.2100.0GSM131695ATGE_79_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
179.6100.0GSM131694ATGE_79_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
174.8100.0GSM10453WT Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
170.1100.0GSM10451WT Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
168.4100.0E-ATMX-1-raw-cel-1112746209
159.099.9GSM131696ATGE_79_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-138At3g13730820582CYP90D1Encodes a cytochrome P-450 gene that is involved in brassinosteroid biosynthesis, most likely in the conversion step of teasterone (TE) to 3-dehydroteasterone (3DT), and/or 6-deoxoteasterone (6-deoxoTE) to 6-deoxo-3-dehydroteasterone (6-deoxo3DT); or the conversion of cathasterone (CT) to TE, and/or 6-deoxocathasterone (6-deoxoCT) to 6-deoxoTE. Recently, CYP90D1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates). Member of the CYP90C CYP450 family. Similar to Cytochrome P450 90C1 (ROT3).C.G.S.X.
0.025e-136At5g23520832417-F:unknown;P:unknown;C:cytoplasm;FPMBOC.G.S.X.
0.015e-136At5g06670830555ATP binding / microtubule motorF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOFBPAVC.G.S.X.
0.022e+034At5g66460836778(1-4)-beta-mannan endohydrolase, putativeF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOAC.G.S.X.
0.022e+034At4g38680830024GRP2 (GLYCINE RICH PROTEIN 2)Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development.C.G.S.X.
0.012e+034At4g28540828972CKL6 (CASEIN KINASE I-LIKE 6)F:protein serine/threonine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:plasmodesma;MOPBFVAC.G.S.X.
0.012e+034At4g14790827134ATSUV3encodes a nuclear-encoded DExH box RNA helicase, which is localized to mitochondria and whose in vitro ATPase activity is stimulated with mitochondrial RNA.C.G.S.X.
0.012e+034At3g50700824234AtIDD2 (Arabidopsis thaliana Indeterminate(ID)-Domain 2)zinc finger protein, similar to maize Indeterminate1 (ID1)C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.034e-240Glycine maxGma.12779.1.A1_atCD397557--2e-1At2g02960zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.032e-136Hordeum vulgareHD07M18r_atHD07M18r--7e-1At3g29370unknown proteinC.G.S.X.
0.034e+034Oryza sativaOs12g05425009640.m03462--1e+1At5g63100unknown proteinC.G.S.X.
0.033e+034Populus trichocarpaPtpAffx.209170.1.S1_s_atpmrna18156hypothetical protein-4e-1At3g0556060S ribosomal protein L22-2 (RPL22B)C.G.S.X.
0.028e+032Triticum aestivumTaAffx.75697.1.A1_x_atBJ242278--2e-5At1g77690LAX3 (LIKE AUX1 3)C.G.S.X.
0.031e-136Vitis vinifera1617046_atCF512505hypothetical protein LOC100244517-2e-1At1g68160unknown proteinC.G.S.X.
0.035e-238Zea maysZm.2899.1.A1_atCK347775G-box-binding factor 4-2e-1At3g44460DPBF2C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0043193Any process that activates or increases the frequency, rate or extent of the DNA-dependent transcription of a specific gene or genes.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage