CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g44460

Gene name DPBF2

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.52 67.4 At3g44460 823571 DPBF2 basic leucine zipper transcription factor (BZIP67), identical to basic leucine zipper transcription factor GI:18656053 from (Arabidopsis thaliana); identical to cDNA basic leucine zipper transcription factor (atbzip67 gene) GI:18656052. Located in the nucleus and expressed during seed maturation in the cotyledons. S.X. H.G.
0.95 97.0 At1g25410 839127 ATIPT6 AB061404 Arabidopsis thaliana AtIPT6 mRNA for cytokinin synthase, complete cds S.X. H.G.
0.86 93.1 At5g51490 835223 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOM S.X. H.G.
0.80 89.8 At1g18100 838390 E12A11 E12A11 protein (E12A11) S.X. H.G.
0.76 87.4 At1g73290 843663 scpl5 (serine carboxypeptidase-like 5) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO S.X. H.G.
0.70 83.5 At2g25940 817135 ALPHA-VPE (alpha-vacuolar processing enzyme) Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. S.X. H.G.
0.70 83.5 At1g65880 842900 BZO1 (BENZOYLOXYGLUCOSINOLATE 1) Encodes a benzoate-CoA ligase. Involved in the biosynthesis of benzoyloxyglucosinolate in Arabidopsis seeds. S.X. H.G.
0.67 81.6 At4g25980 828704 cationic peroxidase, putative F:peroxidase activity;P:response to oxidative stress;C:endomembrane system;PFOM S.X. H.G.
0.67 81.6 At5g44360 834462 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM S.X. H.G.
0.59 74.7 At5g07500 830642 PEI1 Encodes an embryo-specific zinc finger transcription factor required for heart-stage embryo formation. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
580.1 100.0 GSM131699 ATGE_81_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
516.4 100.0 GSM131698 ATGE_81_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
495.6 100.0 GSM131697 ATGE_81_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
301.7 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
216.2 100.0 GSM131695 ATGE_79_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
179.6 100.0 GSM131694 ATGE_79_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
174.8 100.0 GSM10453 WT Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
170.1 100.0 GSM10451 WT Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
168.4 100.0 E-ATMX-1-raw-cel-1112746209
159.0 99.9 GSM131696 ATGE_79_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-1 38 At3g13730 820582 CYP90D1 Encodes a cytochrome P-450 gene that is involved in brassinosteroid biosynthesis, most likely in the conversion step of teasterone (TE) to 3-dehydroteasterone (3DT), and/or 6-deoxoteasterone (6-deoxoTE) to 6-deoxo-3-dehydroteasterone (6-deoxo3DT); or the conversion of cathasterone (CT) to TE, and/or 6-deoxocathasterone (6-deoxoCT) to 6-deoxoTE. Recently, CYP90D1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates). Member of the CYP90C CYP450 family. Similar to Cytochrome P450 90C1 (ROT3). C.G. S.X.
0.02 5e-1 36 At5g23520 832417 - F:unknown;P:unknown;C:cytoplasm;FPMBO C.G. S.X.
0.01 5e-1 36 At5g06670 830555 ATP binding / microtubule motor F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOFBPAV C.G. S.X.
0.02 2e+0 34 At5g66460 836778 (1-4)-beta-mannan endohydrolase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOA C.G. S.X.
0.02 2e+0 34 At4g38680 830024 GRP2 (GLYCINE RICH PROTEIN 2) Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development. C.G. S.X.
0.01 2e+0 34 At4g28540 828972 CKL6 (CASEIN KINASE I-LIKE 6) F:protein serine/threonine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:plasmodesma;MOPBFVA C.G. S.X.
0.01 2e+0 34 At4g14790 827134 ATSUV3 encodes a nuclear-encoded DExH box RNA helicase, which is localized to mitochondria and whose in vitro ATPase activity is stimulated with mitochondrial RNA. C.G. S.X.
0.01 2e+0 34 At3g50700 824234 AtIDD2 (Arabidopsis thaliana Indeterminate(ID)-Domain 2) zinc finger protein, similar to maize Indeterminate1 (ID1) C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-2 40 Glycine max Gma.12779.1.A1_at CD397557 - - 2e-1 At2g02960 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 2e-1 36 Hordeum vulgare HD07M18r_at HD07M18r - - 7e-1 At3g29370 unknown protein C.G. S.X.
0.03 4e+0 34 Oryza sativa Os12g0542500 9640.m03462 - - 1e+1 At5g63100 unknown protein C.G. S.X.
0.03 3e+0 34 Populus trichocarpa PtpAffx.209170.1.S1_s_at pmrna18156 hypothetical protein - 4e-1 At3g05560 60S ribosomal protein L22-2 (RPL22B) C.G. S.X.
0.02 8e+0 32 Triticum aestivum TaAffx.75697.1.A1_x_at BJ242278 - - 2e-5 At1g77690 LAX3 (LIKE AUX1 3) C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1617046_at CF512505 hypothetical protein LOC100244517 - 2e-1 At1g68160 unknown protein C.G. S.X.
0.03 5e-2 38 Zea mays Zm.2899.1.A1_at CK347775 G-box-binding factor 4 - 2e-1 At3g44460 DPBF2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0043193 Any process that activates or increases the frequency, rate or extent of the DNA-dependent transcription of a specific gene or genes.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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