CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g44450

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g44450 823570 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.04 0.9 At3g01060 821278 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BOFP S.X. H.G.
0.03 0.6 At3g61220 825294 short-chain dehydrogenase/reductase (SDR) family protein F:(-)-menthol dehydrogenase activity, oxidoreductase activity, (+)-neomenthol dehydrogenase activity;P:defense response;C:plasma membrane;BOMFPA S.X. H.G.
0.02 0.4 At5g57345 835840 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO S.X. H.G.
0.01 0.2 At4g12310 826840 CYP706A5 member of CYP706A S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
52.1 99.8 GSM151696 Col-0 uninoculated, biological replicate 3 GSE6556 Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
52.1 99.8 E-ATMX-33-raw-cel-1562596241
50.4 99.8 GSM151701 Col-0 48 hpi, biological replicate 2 GSE6556 Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
42.8 99.8 GSM269812 WT leaf-well watered-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
36.2 99.7 E-MEXP-1345-raw-cel-1559561259
34.8 99.7 E-ATMX-33-raw-cel-1562596197
34.7 99.7 Evans_2-2_col-WT-cold_ATH1
33.7 99.7 Evans_2-8_35s-FAD3-cold_ATH1
33.5 99.7 E-MEXP-1345-raw-cel-1559561229
33.4 99.7 E-MEXP-449-raw-cel-676423095
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-1 36 At4g09160 826497 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein F:transporter activity;P:transport;C:chloroplast;MOFBPVA C.G. S.X.
0.02 2e-1 36 At4g26300 828736 emb1027 (embryo defective 1027) F:nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, arginyl-tRNA aminoacylation;C:mitochondrion, chloroplast;OBMAFPV C.G. S.X.
0.03 7e-1 34 At5g22150 832276 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 7e-1 34 At1g01740 839253 protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;PMBOFVA C.G. S.X.
0.02 3e+0 32 At5g10090 830873 tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;MOBFPA C.G. S.X.
0.02 3e+0 32 At5g01280 831711 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBVPA C.G. S.X.
0.01 3e+0 32 At5g66630 836795 DAR5 (DA1-RELATED PROTEIN 5) F:zinc ion binding;P:unknown;C:unknown;PMOBF C.G. S.X.
0.03 3e+0 32 At4g21585 828244 ENDO4 (endonuclease 4) Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. C.G. S.X.
0.02 3e+0 32 At4g23800 828480 high mobility group (HMG1/2) family protein F:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-1 36 Glycine max Gma.9955.1.S1_at BE821039 - - 3e-1 At3g44450 unknown protein C.G. S.X.
0.04 5e+0 30 Hordeum vulgare HVSMEl0010B18r2_at HVSMEl0010B18r2 - - 1e+0 At1g49130 zinc finger (B-box type) family protein C.G. S.X.
0.04 1e+0 34 Oryza sativa Os05g0398200 9633.m03037 - - 1e+0 At3g44450 unknown protein C.G. S.X.
0.07 9e-1 34 Populus trichocarpa PtpAffx.214079.1.S1_at pmrna27416 hypothetical protein - 3e-1 At3g44450 unknown protein C.G. S.X.
0.05 3e+0 32 Triticum aestivum Ta.16113.1.S1_at CA599420 - - 2e+0 At3g44450 unknown protein C.G. S.X.
0.04 3e+0 30 Vitis vinifera 1611304_at CB343069 hypothetical LOC100257033 - 7e-1 At3g46000 ADF2 (ACTIN DEPOLYMERIZING FACTOR 2) C.G. S.X.
0.04 5e+0 30 Zea mays Zm.16228.2.S1_x_at CF627633 hypothetical protein LOC100275186 - 2e-2 At4g17310 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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