CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g43270

Gene name pectinesterase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g43270 823402 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:plant-type cell wall;PBFM S.X. H.G.
0.23 19.3 At3g53180 824484 catalytic/ glutamate-ammonia ligase F:glutamate-ammonia ligase activity, catalytic activity;P:nitrogen compound metabolic process, N-terminal protein myristoylation, nitrogen fixation, metabolic process, glutamine biosynthetic process;C:unknown;BOAFMP S.X. H.G.
0.21 15.8 At3g50760 824240 GATL2 (Galacturonosyltransferase-like 2) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
0.20 14.4 At5g51070 835180 ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1) ATP-dependent Clp protease regulatory subunit S.X. H.G.
0.18 11.4 At1g76390 843971 armadillo/beta-catenin repeat family protein / U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:plasma membrane;PMFOBV S.X. H.G.
0.17 10.2 At5g01850 831760 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
0.17 10.2 At4g16760 827381 ACX1 (ACYL-COA OXIDASE 1) Encodes a medium to long-chain acyl-CoA oxidase. Catalyzes the first step of fatty acid beta-oxidation. Involved in jasmonate biosynthesis. Gene expression is induced by wounding, drought stress, abscisic acid, and jasmonate. S.X. H.G.
0.17 10.2 At4g34230 829572 ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5) Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use sinapyl, caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates. S.X. H.G.
0.17 10.2 At1g28050 839698 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POAF S.X. H.G.
0.14 6.8 At3g59050 825074 ATPAO3 (Polyamine oxidase 3) F:polyamine oxidase activity;P:polyamine catabolic process;C:peroxisome;BMOFPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
222.7 100.0 GSM128675 Underwood_1-28_DC3000-10e8-7h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
192.3 100.0 GSM131113 AtGen_B-41_3-6-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
135.1 99.9 GSM142836 MG001_ATH1_A15-Torres-4N6 GSE6176 Impact of Type III effectors on plant defense responses
127.9 99.9 GSM142834 MG001_ATH1_A12-Torres-5N6 GSE6176 Impact of Type III effectors on plant defense responses
126.6 99.9 GSM131127 AtGen_B-13_1-6-4_REP1_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
118.7 99.9 GSM128676 Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
100.0 99.9 GSM131141 AtGen_B-27_2-6-4_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
81.6 99.9 GSM142832 GM001_ATH1_A9-Torres-3N6_repeat2 GSE6176 Impact of Type III effectors on plant defense responses
80.8 99.9 GSM205156 protoplast_controlDNA_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
78.0 99.9 GSM142839 MG001_ATH1_A18-Torres-6N6 GSE6176 Impact of Type III effectors on plant defense responses
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.14 4e-15 83 At4g33220 829458 enzyme inhibitor/ pectinesterase F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.03 3e-6 54 At4g02320 828067 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOM C.G. S.X.
0.01 3e-3 44 At5g09760 830836 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, chloroplast, plant-type cell wall;PBFOM C.G. S.X.
0.03 1e-2 42 At2g26440 817184 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.04 5e-2 40 At4g02300 827708 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.01 2e-1 38 At5g50390 835107 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMF C.G. S.X.
0.01 2e-1 38 At5g27870 832850 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;BMOFPVA C.G. S.X.
0.01 2e-1 38 At3g10710 820240 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM C.G. S.X.
0.02 2e-1 38 At2g03230 814852 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 6e-21 103 Glycine max Gma.5447.1.S1_a_at BI968067 - - 4e-21 At3g43270 pectinesterase family protein C.G. S.X.
0.02 2e+0 34 Hordeum vulgare Contig9774_s_at Contig9774 - - 1e+0 At5g03660 unknown protein C.G. S.X.
0.02 2e+0 36 Oryza sativa Os01g0311800 AK107006.1 - Pectin methylesterase isoform alpha (EC 3.1.1.11)(Fragment) 7e-11 At1g02810 pectinesterase family protein C.G. S.X.
0.16 3e-1 38 Populus trichocarpa PtpAffx.132383.1.A1_s_at CV268088 hypothetical protein - 1e-1 At3g43270 pectinesterase family protein C.G. S.X.
0.02 8e-1 36 Triticum aestivum TaAffx.28659.1.S1_at CA657766 - - 3e+0 At1g75430 BLH11 (BEL1-LIKE HOMEODOMAIN 11) C.G. S.X.
0.03 4e-3 42 Vitis vinifera 1612672_at CF215975 hypothetical protein LOC100253692 - 3e-4 At5g64640 pectinesterase family protein C.G. S.X.
0.02 5e+0 32 Zea mays ZmAffx.69.1.A1_at AI665154 - - 8e-1 Atcg01070 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0042545 The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00400 Homogalacturonan degradation
00422 Carbohydrate esterases
00442 Rhamnogalacturonan II degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00040 Pentose and glucuronate interconversions
00500 Starch and sucrose metabolism
01100 Metabolic pathways
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