Gene omics information

Query gene ID At3g43250
Gene name cell cycle control protein-related
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5368.6At3g43250823400cell cycle control protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBS.X.H.G.
0.4050.8At1g43160840915RAP2.6 (related to AP2 6)encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family (RAP2.6). The protein contains one AP2 domain. There are 7 members in this subfamily.S.X.H.G.
0.4050.8At3g48520824011CYP94B3member of CYP94BS.X.H.G.
0.2930.3At1g61120842405TPS04 (TERPENE SYNTHASE 04)Encodes a geranyllinalool synthase that produces a precursor to TMTT, a volatile plant defense C16-homoterpene. GES transcript levels rise in response to alamethicin, a fungal peptide mixture that damages membranes. This transcriptional response is blocked in JA biosynthetic and JA signaling mutants, but GES transcript levels still rise in response to alamethicin in mutants with salicylic acid and ethylene biosynthetic and/or signaling defects. GES transcripts also accumulate in response to a larval infestation. This enzyme does not localize to the plastids, and it may be present in the cytosol or endoplasmic reticulum.S.X.H.G.
0.1912.7At1g10585837600transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;PS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
319.4100.0GSM128676Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
184.8100.0GSM142839MG001_ATH1_A18-Torres-6N6GSE6176Impact of Type III effectors on plant defense responses
162.899.9GSM142838MG001_ATH1_A17-Torres-6N3GSE6176Impact of Type III effectors on plant defense responses
146.399.9GSM142829GM001_ATH1_A11-Torres-5N3GSE6176Impact of Type III effectors on plant defense responses
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.273e-1479At2g32050817765cell cycle control protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPC.G.S.X.
0.026e-342At5g60120836134TOE2F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POBVC.G.S.X.
0.016e-342At4g38600830017KAK (KAKTUS)encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content.C.G.S.X.
0.026e-342At4g39753830132kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOAVFC.G.S.X.
0.036e-342At2g22430816775ATHB6Encodes a homeodomain leucine zipper class I (HD-Zip I) protein that is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis.C.G.S.X.
0.026e-342At2g15320816021leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:unknown;PMOBFAC.G.S.X.
0.042e-240At5g445652746190unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.022e-240At3g46750823828unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.022e-240At3g08970820049ATERDJ3AJ domain protein localized in ER lumen. Can compensate for the growth defect in jem1 scj1 mutant yeast. Also shows similarity to HSP40 proteins and is induced by heat stress. At high temperatures, mutant alleles are not transmitted through the pollen due to defects in pollen tube growth.C.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.043e-240Glycine maxGmaAffx.90615.1.S1_atCF806340--7e-64At1g17130cell cycle control protein-relatedC.G.S.X.
0.043e-342Hordeum vulgareHF21N04r_atHF21N04r--2e+0At4g19150ankyrin repeat family proteinC.G.S.X.
0.031e-242Oryza sativaOs03g0108400BX900155-Snf7 family protein4e-3At3g45000VPS24.2C.G.S.X.
0.093e-240Populus trichocarpaPtpAffx.15966.1.S1_atCV235182--4e-27At1g17130cell cycle control protein-relatedC.G.S.X.
0.052e-344Triticum aestivumTaAffx.31101.1.S1_atCA619504--1e+1At1g51960IQD27 (IQ-domain 27)C.G.S.X.
0.091e-446Vitis vinifera1614553_atCF515978hypothetical protein LOC100246531-6e-37At1g17130cell cycle control protein-relatedC.G.S.X.
0.042e-136Zea maysZmAffx.1083.1.S1_atAI974922--1e+0At1g59830PP2A-1C.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage