CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g43190

Gene name SUS4

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.59 74.7 At3g43190 823393 SUS4 Encodes a protein with sucrose synthase activity (SUS4). S.X. H.G.
0.96 97.3 At3g29970 822700 germination protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.87 93.5 At2g17850 816295 - F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMF S.X. H.G.
0.80 89.8 At5g10040 830868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.75 86.9 At4g33070 829444 pyruvate decarboxylase, putative F:in 6 functions;P:unknown;C:membrane;BOFPAMV S.X. H.G.
0.75 86.9 At4g33560 829495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.73 85.5 At2g29870 817537 major intrinsic family protein / MIP family protein F:water channel activity;P:transport;C:membrane;BPMOFA S.X. H.G.
0.70 83.5 At5g66985 836833 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At1g33055 840201 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.67 81.6 At2g16060 816103 AHB1 (ARABIDOPSIS HEMOGLOBIN 1) Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
138.9 99.9 GSM133894 Schroeder_1-12_JS44-starve-96h_Rep1_ATH1 GSE5744 Response to potassium starvation in roots
97.7 99.9 GSM142593 DB001_ATH1_A3-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
95.8 99.9 GSM142592 DB001_ATH1_A2-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
94.6 99.9 GSM142596 DB001_ATH1_A6-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
92.7 99.9 GSM131346 AtGen_6-4322_Droughtstress-Roots-3.0h_Rep2 GSE5624 AtGenExpress: Stress Treatments (Drought stress)
90.9 99.9 GSM142594 DB001_ATH1_A4-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
89.6 99.9 GSM131433 AtGen_6-8524_Woundingstress-Roots-12.0h_Rep1 GSE5627 AtGenExpress: Stress Treatments (Wounding stress)
84.3 99.9 GSM131334 AtGen_6-4722_Droughtstress-Roots-0.25h_Rep2 GSE5624 AtGenExpress: Stress Treatments (Drought stress)
84.0 99.9 GSM133892 Schroeder_1-6_JS43-control-96h_Rep1_ATH1 GSE5744 Response to potassium starvation in roots
76.9 99.9 GSM131242 AtGen_6-0322_Control-Roots-3.0h_Rep2 GSE5620 AtGenExpress: Stress Treatments (Control plants)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.84 0 1798 At5g20830 832206 SUS1 (SUCROSE SYNTHASE 1) Encodes a protein with sucrose synthase activity (SUS1). C.G. S.X.
0.20 2e-30 135 At4g02280 828081 SUS3 (sucrose synthase 3) Encodes a protein with sucrose synthase activity (SUS3). C.G. S.X.
0.22 7e-30 133 At5g49190 834978 SUS2 (SUCROSE SYNTHASE 2) Encodes a putative sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). Induced specifically by O(2) deficiency. C.G. S.X.
0.06 3e-10 67 At1g73370 843672 SUS6 (SUCROSE SYNTHASE 6) Encodes a protein with sucrose synthase activity (SUS6). C.G. S.X.
0.10 5e-6 54 At5g37180 833692 SUS5 Encodes a protein with sucrose synthase activity (SUS5). C.G. S.X.
0.01 1e+0 36 At5g46640 834707 DNA-binding family protein F:DNA binding;P:unknown;C:unknown;PBMOF C.G. S.X.
0.01 1e+0 36 At5g39480 833944 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 1e+0 36 At5g39770 833973 DNA binding / endonuclease/ nuclease/ nucleic acid binding / protein binding Represents a non-function pseudogene homologous to AtMSU81 (At4g30870). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.49 6e-99 363 Glycine max Gma.3956.1.S1_at BE659401 - - 4e-139 At5g20830 SUS1 (SUCROSE SYNTHASE 1) C.G. S.X.
0.24 3e-43 176 Hordeum vulgare Contig460_s_at Contig460 sucrose synthase - 6e-12 At5g20830 SUS1 (SUCROSE SYNTHASE 1) C.G. S.X.
0.26 1e-26 123 Oryza sativa Os07g0616800 AK100306.1 - Sucrose synthase 3 (EC 2.4.1.13) (Sucrose-UDPglucosyltransferase 3) 3e-29 At5g20830 SUS1 (SUCROSE SYNTHASE 1) C.G. S.X.
0.43 4e-78 293 Populus trichocarpa PtpAffx.283.1.A1_x_at CV226943 hypothetical protein - 5e-96 At5g20830 SUS1 (SUCROSE SYNTHASE 1) C.G. S.X.
0.24 1e-16 89 Triticum aestivum Ta.4274.1.S1_at BJ266714 - - 3e-20 At5g20830 SUS1 (SUCROSE SYNTHASE 1) C.G. S.X.
0.43 1e-41 171 Vitis vinifera 1619223_s_at CB005867 hypothetical protein LOC100249279 - 3e-41 At3g43190 SUS4 C.G. S.X.
0.24 2e-12 73 Zea mays Zm.3550.1.A1_at CF624216 sucrose synthase1 - 8e-12 At3g43190 SUS4 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0005986 The chemical reactions and pathways resulting in the formation of sucrose, the disaccharide fructofuranosyl-glucopyranoside.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00021 Cellulose biosynthesis
00022 Biosynthesis and metabolism of sucrose
00359 Glucosyltransferase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00500 Starch and sucrose metabolism
01100 Metabolic pathways
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