CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g42130

Gene name glycine-rich protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At3g42130 823185 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFV S.X. H.G.
0.25 22.6 At2g07395 3768424 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.23 19.3 At2g07673 815345 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.22 17.5 At3g30845 822868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.21 15.8 At2g05660 3768558 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
579.1 100.0 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
466.1 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
455.5 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
432.8 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
376.2 100.0 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
344.6 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
308.8 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
307.0 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
305.8 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
303.3 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.67 2e-70 264 At2g03570 814886 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.31 2e-30 131 At1g34400 840342 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.27 7e-21 99 At4g39260 830082 GR-RBP8 Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). C.G. S.X.
0.43 7e-18 89 At2g10920 815556 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.09 6e-3 40 At4g38680 830024 GRP2 (GLYCINE RICH PROTEIN 2) Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development. C.G. S.X.
0.03 2e-2 38 At2g17870 816297 cold-shock DNA-binding family protein F:DNA binding, zinc ion binding, nucleic acid binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BMOVPFA C.G. S.X.
0.02 9e-2 36 At5g62190 836340 PRH75 DEAD/DEAH box RNA helicase PRH75 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 5e-1 34 Glycine max Gma.5532.2.S1_s_at BU965100 Allantoate amidohydrolase (aah gene) - 1e-5 At4g20070 ATAAH (Arabidopsis thaliana Allantoate Amidohydrolase) C.G. S.X.
0.05 2e-1 34 Hordeum vulgare HVSMEn0015C19r2_at HVSMEn0015C19r2 - - 7e-2 At4g13850 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) C.G. S.X.
Os07g0201650 0.05 2e-1 Oryza sativa Os07g0201600 9635.m00984 - - 3e-1 At3g42130 glycine-rich protein C.G. S.X.
0.08 2e+0 32 Populus trichocarpa PtpAffx.653.14.A1_s_at CX173034 hypothetical protein - 3e-4 At1g70470 unknown protein C.G. S.X.
0.06 4e-1 34 Triticum aestivum TaAffx.23863.1.S1_at CA729345 - - 1e-2 At1g54215 proline-rich family protein C.G. S.X.
0.05 4e-1 32 Vitis vinifera 1607225_at CB914105 hypothetical protein LOC100264253 - 1e-3 At1g75050 - C.G. S.X.
0.05 2e+0 30 Zea mays ZmAffx.259.1.S1_s_at AI668215 Glycine-rich protein - 9e-1 At5g40970 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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