CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g42050

Gene name vacuolar ATP synthase subunit H family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.53 68.6 At3g42050 823170 vacuolar ATP synthase subunit H family protein F:binding, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:vacuolar membrane, chloroplast, plasma membrane, vacuole, plant-type vacuole;MFOP S.X. H.G.
0.89 94.6 At5g19760 832096 dicarboxylate/tricarboxylate carrier (DTC) F:oxidative phosphorylation uncoupler activity, binding;P:transport, mitochondrial transport;C:in 6 components;MFPO S.X. H.G.
0.75 86.9 At3g55440 824710 TPI (TRIOSEPHOSPHATE ISOMERASE) Encodes triosephosphate isomerase. S.X. H.G.
0.67 81.6 At3g10920 820263 MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) manganese superoxide dismutase (MSD1) S.X. H.G.
0.60 75.7 At5g40810 834081 cytochrome c1, putative F:electron carrier activity, iron ion binding, heme binding, electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity;P:unknown;C:mitochondrial respiratory chain, mitochondrion, vacuole, mitochondrial respiratory chain complex III, membrane;OBMFP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.9 98.5 GSM265425 Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
5.8 98.4 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
5.6 98.4 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
5.4 98.3 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
5.1 98.2 GSM265424 Arabidopsis, root, longitudinal zone 4, standard conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
5.1 98.2 GSM133267 RIKEN-GODA5A-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
4.9 98.1 GSM265433 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
4.4 97.8 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
4.3 97.7 GSM133266 RIKEN-GODA4B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
4.2 97.6 GSM133272 RIKEN-GODA7B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 7e-1 36 At5g16150 831472 PGLCT (PLASTIDIC GLC TRANSLOCATOR) Encodes a putative plastidic glucose transporter. C.G. S.X.
0.01 7e-1 36 At1g51880 841615 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 3e+0 34 At5g65370 836662 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, binding;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 3e+0 34 At5g21326 832246 protein kinase family protein / NAF domain-containing protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:signal transduction, protein amino acid phosphorylation;C:unknown;MOPFBVA C.G. S.X.
0.02 3e+0 34 At5g39530 833949 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOP C.G. S.X.
0.01 3e+0 34 At4g09110 826489 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB C.G. S.X.
0.01 3e+0 34 At4g24910 828593 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POB C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 1e-43 178 Glycine max Gma.5705.1.S1_at CD405659 - - 1e-43 At3g42050 vacuolar ATP synthase subunit H family protein C.G. S.X.
0.16 1e-16 87 Hordeum vulgare Contig3655_at Contig3655 - - 3e-16 At3g42050 vacuolar ATP synthase subunit H family protein C.G. S.X.
0.19 2e-12 75 Oryza sativa Os07g0549700 AK104331.1 - ARM repeat fold domain containing protein 1e-12 At3g42050 vacuolar ATP synthase subunit H family protein C.G. S.X.
0.54 4e-46 186 Populus trichocarpa Ptp.5482.1.S1_at CX655031 hypothetical protein - 2e-46 At3g42050 vacuolar ATP synthase subunit H family protein C.G. S.X.
0.14 1e-8 61 Triticum aestivum Ta.4798.1.S1_at CK163023 Vacuolar proton ATPase subunit H - 2e-8 At3g42050 vacuolar ATP synthase subunit H family protein C.G. S.X.
0.48 5e-42 171 Vitis vinifera 1609434_at CF211782 hypothetical protein LOC100240790 - 1e-41 At3g42050 vacuolar ATP synthase subunit H family protein C.G. S.X.
0.19 1e-9 63 Zea mays Zm.3986.1.A1_at AY108648.1 vacuolar ATPase subunit H protein - 4e-9 At3g42050 vacuolar ATP synthase subunit H family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0015986 The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00190 Oxidative phosphorylation
01100 Metabolic pathways
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