CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g31910

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At3g31910 822931 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOMF S.X. H.G.
0.75 86.9 At4g08140 826362 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.67 81.6 At1g54430 841885 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.55 70.6 At2g28755 817425 UDP-D-glucuronate carboxy-lyase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPMFA S.X. H.G.
0.47 61.2 At5g28880 3770842 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
930.2 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
867.6 100.0 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
569.8 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
523.2 100.0 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
139.1 99.9 E-MEXP-509-raw-cel-829148456
136.9 99.9 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
127.3 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
122.6 99.9 E-MEXP-509-raw-cel-829148348
121.1 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
120.9 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-2 40 At5g45570 834593 Ulp1 protease family protein F:peptidase activity, cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;POMBFA C.G. S.X.
0.03 4e-2 40 At5g28810 832997 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBFA C.G. S.X.
0.03 1e-1 38 At2g35850 818158 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 6e-1 36 At5g20610 832183 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPBFAV C.G. S.X.
0.02 6e-1 36 At5g14340 831284 AtMYB40 (myb domain protein 40) Member of the R2R3 factor gene family. C.G. S.X.
0.01 6e-1 36 At2g36730 818245 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:cellular_component unknown;POMFB C.G. S.X.
0.01 6e-1 36 At2g35880 818161 - F:molecular_function unknown;P:unknown;C:unknown;MOFBPVA C.G. S.X.
0.02 6e-1 36 At1g01350 838964 nucleic acid binding / protein binding / zinc ion binding F:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MFOPB C.G. S.X.
0.01 2e+0 34 At5g48340 834887 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-1 36 Glycine max Gma.5238.2.S1_at AW317351 - - 7e-11 At4g36780 transcription regulator C.G. S.X.
0.02 2e-2 40 Hordeum vulgare HVSMEc0015C15r2_at HVSMEc0015C15r2 - - 4e+0 At2g10557 unknown protein C.G. S.X.
Os08g0534900 0.02 1e+0 Oryza sativa Os03g0197000 AK071163.1 - Conserved hypothetical protein 2e-1 At1g02405 proline-rich family protein C.G. S.X.
0.03 8e-1 36 Populus trichocarpa PtpAffx.207606.1.S1_at pmrna15091 hypothetical protein - 2e+0 At5g52570 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) C.G. S.X.
0.02 3e+0 34 Triticum aestivum Ta.4583.1.S1_x_at BJ268299 - - 2e+0 At4g19070 cadmium-responsive protein / cadmium induced protein (AS8) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1619911_at CF517464 - - 4e+0 At4g24930 thylakoid lumenal 17.9 kDa protein, chloroplast C.G. S.X.
0.02 4e+0 32 Zea mays ZmAffx.1278.1.S1_s_at 11990232-66 - - 1e+0 At3g22880 DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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