Gene omics information

Query gene ID At3g30845
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8693.1At3g30845822868unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8089.8At1g35110840395transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.7989.1At2g056603768558transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.7687.4At2g29610817511-pseudogene of the F-box protein family, contains Pfam profile PF00646: F-box domainS.X.H.G.
0.7586.9At2g07770815424transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.7284.8At2g07673815345unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6982.9At1g437453767315transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.6882.2At1g360353766971transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.6882.2At2g047603767977transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.6781.6At1g364403767000transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
537.9100.0GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
490.6100.0GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
474.0100.0GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
346.2100.0GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
303.1100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
222.5100.0GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
211.5100.0GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
208.5100.0GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
205.4100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
199.0100.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.024e-548At4g16630827364DEAD/DEAH box helicase, putative (RH28)F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;MBOFPVAC.G.S.X.
0.042e-446At1g13195837878zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFC.G.S.X.
0.036e-444At4g16100827296unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.012e-342At4g19490827690protein bindingPutative homolog of yeast Vps54. Thought to associate with POK and ATVPS53 in a plant GARP-like complex involved in the membrane trafficking system.C.G.S.X.
0.042e-342At3g11100820281transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;POMFBAC.G.S.X.
0.081e-240At4g19550827697transcription regulator/ zinc ion bindingF:transcription regulator activity, zinc ion binding;P:regulation of transcription, DNA-dependent, transcription initiation;C:transcription factor complex;OMPFBVC.G.S.X.
0.031e-240At3g5866082503560S ribosomal protein-relatedF:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:nucleolus, membrane;MOFPBAVC.G.S.X.
0.041e-240At3g24860822084hydroxyproline-rich glycoprotein family proteinF:transcription factor activity;P:biological_process unknown;C:chloroplast;POMVFBC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.063e-342Glycine maxGmaAffx.51039.2.S1_atBM521845--3e+0At4g19480unknown proteinC.G.S.X.
0.072e-238Hordeum vulgareContig25984_atContig25984--9e-1At4g24380unknown proteinC.G.S.X.
0.043e-136Oryza sativaOs07g06293009635.m04372--4e-1At3g30845unknown proteinC.G.S.X.
0.072e-136Populus trichocarpaPtpAffx.225043.1.S1_s_atpmrna44118hypothetical protein-1e+0At2g04570GDSL-motif lipase/hydrolase family proteinC.G.S.X.
0.056e-134Triticum aestivumTaAffx.85445.1.S1_atCA622736--1e-3At1g16180TMS membrane family protein / tumour differentially expressed (TDE) family proteinC.G.S.X.
0.074e-236Vitis vinifera1608876_atCA817147hypothetical protein LOC100261976-2e-9At1g47970unknown proteinC.G.S.X.
0.071e+032Zea maysZm.9120.1.A1_atBM348766--9e-2At3g25572CPuORF11 (Conserved peptide upstream open reading frame 11)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage