Gene omics information

Query gene ID At3g29970
Gene name germination protein-related
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7687.4At3g29970822700germination protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.8693.1At2g17850816295-F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMFS.X.H.G.
0.8089.8At5g10040830868unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8089.8At5g66985836833unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7989.1At4g33070829444pyruvate decarboxylase, putativeF:in 6 functions;P:unknown;C:membrane;BOFPAMVS.X.H.G.
0.7788.0At4g10270826619wound-responsive family proteinF:molecular_function unknown;P:response to wounding;C:unknown;PS.X.H.G.
0.7687.4At1g33055840201unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.7486.1At5g39890833986unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
0.7184.2At2g29870817537major intrinsic family protein / MIP family proteinF:water channel activity;P:transport;C:membrane;BPMOFAS.X.H.G.
0.7083.5At2g16060816103AHB1 (ARABIDOPSIS HEMOGLOBIN 1)Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
276.1100.0GSM142593DB001_ATH1_A3-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cells
254.0100.0GSM142594DB001_ATH1_A4-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cells
206.5100.0GSM142596DB001_ATH1_A6-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cells
188.9100.0GSM142902WW001_ATH1_A1-WILLA-CONGSE6181Assembly of the cell wall pectic matrix.
168.6100.0GSM142592DB001_ATH1_A2-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cells
141.099.9GSM290758root - 01% oxygen - 48h - AGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
130.399.9GSM142904WW002_ATH1_A1-willa-CON-REP2GSE6181Assembly of the cell wall pectic matrix.
102.999.9GSM40555Polysomal mRNA - Hypoxia stressGSE2218Changes in transcript abundance and association with large polysomes in response to hypoxia stress
102.199.9E-ATMX-31-raw-cel-1516948018
101.799.9GSM142591DB001_ATH1_A1-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cells
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.083e-238At3g48140823969senescence-associated protein, putativeF:molecular_function unknown;P:leaf senescence;C:endomembrane system;PC.G.S.X.
0.025e-134At5g43190834337F-box family protein (FBX6)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PFOC.G.S.X.
0.022e+032At5g22320832292leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBPFVAC.G.S.X.
0.022e+032At3g07050819890GTP-binding family proteinF:GTP binding;P:biological_process unknown;C:nucleolus;BMOFPAVC.G.S.X.
0.012e+032At3g17205820979UPL6 (UBIQUITIN PROTEIN LIGASE 6)F:ubiquitin-protein ligase activity;P:protein modification process, protein ubiquitination;C:ubiquitin ligase complex, intracellular;MOFPC.G.S.X.
0.012e+032At3g62010825374unknown proteinF:unknown;P:unknown;C:cellular_component unknown;MBOPFC.G.S.X.
0.012e+032At1g62310842529transcription factor jumonji (jmjC) domain-containing proteinF:protein binding, transcription factor activity, zinc ion binding;P:unknown;C:unknown;MPOFBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.094e-238Glycine maxGmaAffx.82499.1.S1_atBM086344--5e-2At3g29970germination protein-relatedC.G.S.X.
0.051e+128Hordeum vulgareHVSMEl0015L16r2_atHVSMEl0015L16r2--2e+0At3g47180zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.044e+032Oryza sativaOsAffx.7402.2.A1_at---0C.G.S.X.
0.113e+032Populus trichocarpaPtpAffx.216900.1.S1_s_atpmrna31954hypothetical protein-2e+0At3g29970germination protein-relatedC.G.S.X.
0.062e+032Triticum aestivumTaAffx.4624.1.S1_atCA680077--2e+0Atmg01030-C.G.S.X.
0.036e-132Vitis vinifera1618139_atCD009805--1e-31At3g55320PGP20 (P-GLYCOPROTEIN 20)C.G.S.X.
0.043e+030Zea maysZmAffx.99.1.A1_atAI665482leucine carboxyl methyltransferase 1-3e+0At4g39300unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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