CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g29780

Gene name RALFL27 (ralf-like 27)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g29780 822684 RALFL27 (ralf-like 27) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. S.X. H.G.
0.60 75.7 At4g28890 829010 protein binding / ubiquitin-protein ligase/ zinc ion binding F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB S.X. H.G.
0.59 74.7 At4g30670 829190 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.52 67.4 At5g40510 834049 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOA S.X. H.G.
0.52 67.4 At4g05200 825868 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.50 65.3 At3g01190 821314 peroxidase 27 (PER27) (P27) (PRXR7) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM S.X. H.G.
0.48 62.5 At1g18980 838479 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO S.X. H.G.
0.48 62.5 At3g25930 822190 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P S.X. H.G.
0.47 61.2 At2g21045 816639 - F:unknown;P:aging;C:unknown;BOPAFM S.X. H.G.
0.47 61.2 At4g15390 827205 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
112.8 99.9 GSM157330 Coates_1-2_ara1OX_Rep1_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
106.3 99.9 GSM157331 Coates_1-3_Col-3_Rep1_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
101.1 99.9 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
91.6 99.9 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
82.6 99.9 GSM157339 Coates_1-11_Col-3_Rep3_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
75.2 99.9 GSM157333 Coates_1-5_Col-0_Rep2_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
74.9 99.9 GSM157335 Coates_1-7_Col-3_Rep2_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
71.1 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
68.0 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
67.5 99.8 GSM157334 Coates_1-6_ara1OX_Rep2_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 1e-2 40 At1g02040 839284 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MOPFVBA C.G. S.X.
0.02 2e-1 36 At5g39080 833900 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO C.G. S.X.
0.03 2e-1 36 At5g12310 831106 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPVF C.G. S.X.
0.02 2e-1 36 At1g30930 839979 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 2e-1 36 At1g14020 837963 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 2e-1 36 At1g09810 837511 ECT11 (evolutionarily conserved C-terminal region 11) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF C.G. S.X.
0.04 7e-1 34 At5g26210 832690 AL4 (ALFIN-LIKE 4) AL4 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA. C.G. S.X.
0.01 7e-1 34 At5g17790 831647 VAR3 (VARIEGATED 3) Encodes a 85.9 kDa protein containing novel repeats and zinc fingers described as protein interaction domains. VAR3 is a part of a protein complex required for normal chloroplast and palisade cell development. Mutants display a variegated phenotype due to somatic areas lacking or containing developmentally retarded chloroplasts and greatly reduced numbers of palisade cells. C.G. S.X.
0.02 7e-1 34 At5g01980 831911 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 9e-1 34 Glycine max HgAffx.11551.1.S1_at CB934899 - - 1e-1 At2g25820 transcription factor C.G. S.X.
0.04 2e-2 38 Hordeum vulgare Contig16899_at Contig16899 - - 6e+0 At3g46666 unknown protein C.G. S.X.
0.07 5e-3 42 Oryza sativa OsAffx.2151.1.S1_at - - - 0 C.G. S.X.
0.07 4e-3 42 Populus trichocarpa PtpAffx.211786.1.S1_at pmrna23119 hypothetical protein - 3e+0 At5g44578 unknown protein C.G. S.X.
0.05 2e-1 36 Triticum aestivum Ta.3331.3.S1_x_at CA650794 - - 9e-4 At1g77350 unknown protein C.G. S.X.
0.05 8e-1 32 Vitis vinifera 1620137_s_at CB911784 hypothetical protein LOC100260466 - 3e+0 At3g20510 unknown protein C.G. S.X.
0.05 7e-2 36 Zea mays ZmAffx.440.1.A1_at AI676978 - - 2e-4 At1g54410 dehydrin family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0007267 Any process that mediates the transfer of information from one cell to another.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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