Gene omics information

Query gene ID At3g29375
Gene name XH domain-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2930.3At3g29375822597XH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVS.X.H.G.
0.2522.6At3g62470825421pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAS.X.H.G.
0.2217.5At5g63700836490zinc finger (C3HC4 type RING finger) family proteinF:protein binding, DNA binding, zinc ion binding;P:histone modification, transcription initiation;C:nucleus;MOPFBVS.X.H.G.
0.092.8At1g03560839458pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAS.X.H.G.
0.030.6At3g50240824186KICP-02Encodes a kinesin-related protein.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
243.2100.0GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
224.9100.0GSM284387Arabidopsis GSUS4bGSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
189.4100.0GSM284386Arabidopsis GSUS3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
169.0100.0GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
125.399.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
123.399.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
115.899.9GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
97.799.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
95.899.9GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
89.899.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.212e-28127At1g80790844418XH/XS domain-containing protein / XS zinc finger domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;MOBFPAVC.G.S.X.
0.101e-1067At2g45000819108EMB2766 (EMBRYO DEFECTIVE 2766)F:structural constituent of nuclear pore;P:biological_process unknown;C:chloroplast, nuclear pore;MOBFPVAC.G.S.X.
0.011e-138At5g12400831115PHD finger transcription factor, putativeF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPOFBC.G.S.X.
0.021e-138At5g26660832723ATMYB86 (MYB DOMAIN PROTEIN 86)a MYB gene encodes a transcriptional repressor of the C4H gene which is involved in the biosynthesis of sinapate esters.C.G.S.X.
0.011e-138At3g48770824038ATP binding / DNA bindingF:DNA binding, ATP binding;P:biological_process unknown;C:chloroplast;PMBOFAC.G.S.X.
0.021e-138At1g57560842131AtMYB50 (myb domain protein 50)Member of the R2R3 factor gene family.C.G.S.X.
0.025e-136At5g60850836206OBP4Encodes a zinc finger protein.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.037e-136Glycine maxGmaAffx.7932.2.S1_atBE211513--6e-2At2g42350zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.031e+034Hordeum vulgareHVSMEn0010A20f_atHVSMEn0010A20f--3e-1At4g30410transcription factorC.G.S.X.
0.024e+034Oryza sativaOsAffx.25147.1.S1_at---0C.G.S.X.
0.027e-136Populus trichocarpaPtpAffx.221236.1.S1_atpmrna37970hypothetical protein-3e-19Atmg00730-C.G.S.X.
0.038e-342Triticum aestivumTa.4126.1.A1_atBJ264268--8e-3At3g29375XH domain-containing proteinC.G.S.X.
0.031e-136Vitis vinifera1609938_atCF515319hypothetical protein LOC100267803-4e-6At3g18640zinc finger protein-relatedC.G.S.X.
0.023e+032Zea maysZm.985.1.A1_atBE638902esterase/lipase/thioesterase-5e+0At4g33610glycine-rich proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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